Evidence map›Paper›PMID 30139641›Full record

ReviewTrends in genetics : TIG2018

Complex-Trait Prediction in the Era of Big Data.

Gustavo de Los Campos, Ana Ines Vazquez, Stephen Hsu, Louis Lello

Abstract readReview
In one paragraph

Review in Trends in genetics : TIG, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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  15. Review
  16. Searching for improvements in predicting human eye colour from DNA.International journal of legal medicine · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Gustavo de Los CamposDepartment of Epidemiology and Biostatistics, Michigan State University, East Lansing, MI 48824, USA; Department of Statistics and Probability, Michigan State University, East Lansing, MI 48824, USA; Institute for Quantitative Health Science and Engineering, Michigan State University, East Lansing, MI 48824, USA. Electronic address: gustavoc@msu.edu.
Ana Ines VazquezDepartment of Epidemiology and Biostatistics, Michigan State University, East Lansing, MI 48824, USA; Department of Statistics and Probability, Michigan State University, East Lansing, MI 48824, USA.
Stephen HsuDepartment of Physics and Astronomy, Michigan State University, East Lansing, MI 48824, USA; Cognitive Genomics Laboratory, BGI, Shenzhen 518083, China.
Louis LelloDepartment of Physics and Astronomy, Michigan State University, East Lansing, MI 48824, USA.

Funding

Statistical Tools for Whole-Genome Prediction of Complex Traits and DiseasesR01GM101219 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DE LOS CAMPOS, GUSTAVO · 2012 to 2017
$1.6M
Factors Affecting Prediction Accuracy of Complex Human Traits and DiseasesR01GM099992 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DE LOS CAMPOS, GUSTAVO · 2012 to 2015
$1.0M
NIGMS NIH HHS R01 GM099992NIGMS NIH HHS R01 GM101219
6 · The paper itself

Abstract

Accurate prediction of complex traits requires using a large number of DNA variants. Advances in statistical and machine learning methodology enable the identification of complex patterns in high-dimensional settings. However, training these highly parameterized methods requires very large data sets. Until recently, such data sets were not available. But the situation is changing rapidly as very large biomedical data sets comprising individual genotype-phenotype data for hundreds of thousands of individuals become available in public and private domains. We argue that the convergence of advances in methodology and the advent of Big Genomic Data will enable unprecedented improvements in complex-trait prediction; we review theory and evidence supporting our claim and discuss challenges and opportunities that Big Data will bring to complex-trait prediction.

Indexed as

Big DataGenome-Wide Association StudyGenomicsGenotypeHumansModels, GeneticMultifactorial InheritancePolymorphism, Single NucleotideQuantitative Trait LociBig Datacomplex traitsdisease riskGWASpredictionSNP

Identifiers

PMID30139641
PMCPMC6150788

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.