Evidence map›Paper›PMID 30139253›Full record

ArticleAnalytical chemistry2018

Ratiometric Barcoding for Mass Cytometry.

Xu Wu, Quinn DeGottardi, I-Che Wu, Li Wu, Jiangbo Yu, William W Kwok, Daniel T Chiu

Abstract read
In one paragraph

Article in Analytical chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xu WuDepartment of Chemistry , University of Washington , Seattle , Washington 98195 , United States.ORCID 0000-0003-1336-9571
Quinn DeGottardiBenaroya Research Institute at Virginia Mason , Seattle , Washington 98101 , United States.
I-Che WuDepartment of Chemistry , University of Washington , Seattle , Washington 98195 , United States.
Li WuDepartment of Chemistry , University of Washington , Seattle , Washington 98195 , United States.ORCID 0000-0002-4118-7970
Jiangbo YuDepartment of Chemistry , University of Washington , Seattle , Washington 98195 , United States.
William W KwokBenaroya Research Institute at Virginia Mason , Seattle , Washington 98101 , United States.
Daniel T ChiuDepartment of Chemistry , University of Washington , Seattle , Washington 98195 , United States.ORCID 0000-0003-2964-9578

Funding

Spatially Resolved Transcriptomics Enabled by Ultrabright Pdot Probes for Interrogation of Complex TissuesR01MH115767 · NIMH · UNIVERSITY OF WASHINGTON · PI CHIU, DANIEL T, VAUGHAN, JOSHUA · 2017 to 2021
$3.7M
Mechanisms for HLA-DQ mediated disease protection and susceptibilityDP3DK097653 · NIDDK · BENAROYA RESEARCH INST AT VIRGINIA MASON · PI KWOK, WILLIAM W. · 2012 to 2012
$3.5M
NIDDK NIH HHS DP3 DK097653NIMH NIH HHS R01 MH115767
6 · The paper itself

Abstract

Barcoding is of importance for high-throughput cellular and molecular analysis. A ratiometric barcoding strategy using lanthanide-coordinated polymer dots (Ln-Pdots) was developed for mass cytometric analysis. By using 3 metal isotopes and 4 ratio intensity levels, 16 barcodes were generated to code, and later decode, cell samples in mass cytometry. The ratiometric Ln-Pdot barcodes not only provided high-mass-signal intensities but also eliminated the bias caused by different concentrations of the labeling reagents/barcodes and run-to-run differences in cell labeling efficiency. The ability to distinguish clearly the 16 sets of labeled MCF-7 cells with mass cytometry demonstrated the excellent resolving power of the ratiometric Ln-Pdot barcodes. Furthermore, the results from barcoding PBMC samples via CD45-specific cellular targeting indicated that the ratiometric Ln-Pdot barcodes could facilitate mass cytometry in high-throughput and multiplexed analysis, especially with precious human samples.

Indexed as

High-Throughput Screening AssaysCell SeparationEndocytosisFlow CytometryFluorescent DyesHumansLeukocyte Common AntigensLeukocytes, MononuclearMCF-7 CellsRadiometrySemiconductorsFluorescent DyesLeukocyte Common AntigensPTPRC protein, human

Identifiers

PMID30139253
PMCPMC6143422

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.