Evidence map›Paper›PMID 30138364›Full record

ArticlePloS one2018

Characterization of diverse homoserine lactone synthases in Escherichia coli.

René Daer, Cassandra M Barrett, Ernesto Luna Melendez, Jiaqi Wu, Stefan J Tekel, Jimmy Xu, Brady Dennison, Ryan Muller, Karmella A Haynes

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Engineered Orthogonal Quorum Sensing Systems for Synthetic Gene Regulation inFrontiers in bioengineering and biotechnology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

René DaerArizona State University, School of Biological and Health Systems Engineering, Tempe, AZ, United States of America.
Cassandra M BarrettArizona State University, School of Biological and Health Systems Engineering, Tempe, AZ, United States of America.
Ernesto Luna MelendezSchool of Molecular Sciences, Arizona State University, Tempe, AZ, United States of America.ORCID 0000-0002-9439-3700
Jiaqi WuSchool of Computing, Informatics, and Decision Systems Engineering, Arizona State University, Tempe, AZ, United States of America.
Stefan J TekelArizona State University, School of Biological and Health Systems Engineering, Tempe, AZ, United States of America.
Jimmy XuSchool of Life Sciences, Arizona State University, Tempe, AZ, United States of America.
Brady DennisonSchool of Life Sciences, Arizona State University, Tempe, AZ, United States of America.
Ryan MullerSchool of Life Sciences, Arizona State University, Tempe, AZ, United States of America.
Karmella A HaynesArizona State University, School of Biological and Health Systems Engineering, Tempe, AZ, United States of America.ORCID 0000-0002-5975-577X
Arizona State University · US

Funding

Synthetic chromatin for cancer researchK01CA188164 · NCI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI HAYNES, KARMELLA ANN · 2014 to 2016
$474k
NCI NIH HHS K01 CA188164
6 · The paper itself

Abstract

Quorum sensing networks have been identified in over one hundred bacterial species to date. A subset of these networks regulate group behaviors, such as bioluminescence, virulence, and biofilm formation, by sending and receiving small molecules called homoserine lactones (HSLs). Bioengineers have incorporated quorum sensing pathways into genetic circuits to connect logical operations. However, the development of higher-order genetic circuitry is inhibited by crosstalk, in which one quorum sensing network responds to HSLs produced by a different network. Here, we report the construction and characterization of a library of ten synthases including some that are expected to produce HSLs that are incompatible with the Lux pathway, and therefore show no crosstalk. We demonstrated their function in a common lab chassis, Escherichia coli BL21, and in two contexts, liquid and solid agar cultures, using decoupled Sender and Receiver pathways. We observed weak or strong stimulation of a Lux receiver by longer-chain or shorter-chain HSL-generating Senders, respectively. We also considered the under-investigated risk of unintentional release of incompletely deactivated HSLs in biological waste. We found that HSL-enriched media treated with bleach were still bioactive, while autoclaving deactivates LuxR induction. This work represents the most extensive comparison of quorum signaling synthases to date and greatly expands the bacterial signaling toolkit while recommending practices for disposal based on empirical, quantitative evidence.

Indexed as

4-ButyrolactoneAgarAnti-Bacterial AgentsBleaching AgentsCulture MediaDisinfectionEnzymesEscherichia coliEscherichia coli ProteinsHot TemperaturePressureQuorum SensingRefuse Disposal4-ButyrolactoneAgarAnti-Bacterial AgentsBleaching AgentsCulture MediaEnzymesEscherichia coli Proteinshomoserine lactone

Identifiers

PMID30138364
PMCPMC6107141
OpenAlexW2951103967

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.