ArticleMicrobial genomics2018
Metagenomic assembly of new (sub)polar Cyanobacteria and their associated microbiome from non-axenic cultures.
Article in Microbial genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
25 citing papers in PubMed, 44 citations in OpenAlex.
- Complete genomes from a xenicMicrobiology spectrum · 2026Article
- Unraveling the diversity and functional potential of cyanosphere microbiomes assembled from terrestrial cyanobacteria.Applied and environmental microbiology · 2026Article
- Article
- The microbiome of marine mat-forming cyanobacteria-a microcosm of taxonomic novelty and phototrophic diversity.ISME communications · 2026Article
- The Biology, Microclimate, and Geology of a Distinctive Ecosystem Within the Sandstone of Hyper-Arid Timna Valley, Israel.Environmental microbiology reports · 2025Article
- Intrathalline Fungal and Bacterial Diversity Is Uncovered in Antarctic Lichen Symbioses.Environmental microbiology reports · 2025Article
- Prediction of Antibiotic Resistance Genes in Cyanobacterial Strains by Whole Genome Sequencing.Microorganisms · 2025Article
- Superior Resolution Profiling of the Coleofasciculus Microbiome by Amplicon Sequencing of the Complete 16S rRNA Gene and ITS Region.Environmental microbiology reports · 2025Article
- Novel Toxin Biosynthetic Gene Cluster in Harmful Algal Bloom-Causing Heteroscytonema crispum: Insights into the Origins of Paralytic Shellfish Toxins.Genome biology and evolution · 2025Article
- Model cyanobacterial consortia reveal a consistent core microbiome independent of inoculation source or cyanobacterial host species.The ISME journal · 2025Article
- Transdisciplinary approaches for the study of cyanobacteria and cyanotoxins.Current research in microbial sciences · 2024Article
- Diurnal cycles drive rhythmic physiology and promote survival in facultative phototrophic bacteria.ISME communications · 2023Article
- Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics.Microbial genomics · 2023Article
- Volatiles of the Apicomplexan Alga Chromera velia and Associated Bacteria.Chembiochem : a European journal of chemical biology · 2023Article
- Chlorine redox chemistry is widespread in microbiology.The ISME journal · 2023Article
- The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics.GigaScience · 2022Article
- The taxonomy of theMicrobial genomics · 2021Article
- Metabolomic Characterization of a cf.Marine drugs · 2021Article
- Article
- ToRQuEMaDA: tool for retrieving queried Eubacteria, metadata and dereplicating assemblies.PeerJ · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Cyanobacteria form one of the most diversified phyla of Bacteria. They are important ecologically as primary producers, for Earth evolution and biotechnological applications. Yet, Cyanobacteria are notably difficult to purify and grow axenically, and most strains in culture collections contain heterotrophic bacteria that were probably associated with Cyanobacteria in the environment. Obtaining cyanobacterial DNA without contaminant sequences is thus a challenging and time-consuming task. Here, we describe a metagenomic pipeline that enables the easy recovery of genomes from non-axenic cultures. We tested this pipeline on 17 cyanobacterial cultures from the BCCM/ULC public collection and generated novel genome sequences for 12 polar or subpolar strains and three temperate ones, including three early-branching organisms that will be useful for phylogenomics. In parallel, we assembled 31 co-cultivated bacteria (12 nearly complete) from the same cultures and showed that they mostly belong to Bacteroidetes and Proteobacteria, some of them being very closely related in spite of geographically distant sampling sites.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.