Evidence map›Paper›PMID 30136358›Full record

ArticleEnvironmental microbiology2018

The model squid-vibrio symbiosis provides a window into the impact of strain- and species-level differences during the initial stages of symbiont engagement.

Sabrina Koehler, Roxane Gaedeke, Cecilia Thompson, Clotilde Bongrand, Karen L Visick, Edward Ruby, Margaret McFall-Ngai

Open access · greenAbstract read
In one paragraph

Article in Environmental microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
20.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 70 citations in OpenAlex.

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  6. Functional analysis of cyclic diguanylate-modulating proteins inbioRxiv : the preprint server for biology · 2024
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  7. Lighting the way: how theJournal of bacteriology · 2024
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  8. Journal of bacteriology · 2024
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  9. Inter-kingdom communication and the sympoietic way of life.Frontiers in cell and developmental biology · 2024
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  15. Review
  16. Review
  17. Beating in on a stable partnership.Nature reviews. Microbiology · 2021
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Sabrina KoehlerPacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, Hawaii, USA.
Roxane GaedekePacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, Hawaii, USA.
Cecilia ThompsonDepartment of Microbiology and Immunology, Loyola University Chicago, Chicago, Illinois, USA.
Clotilde BongrandPacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, Hawaii, USA.
Karen L VisickDepartment of Microbiology and Immunology, Loyola University Chicago, Chicago, Illinois, USA.
Edward RubyPacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, Hawaii, USA.
Margaret McFall-NgaiPacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, Hawaii, USA.ORCID http://orcid.org/0000-0002-6046-6238
University of Hawaiʻi at Mānoa · USLoyola University Chicago · US

Funding

Vibrio fischeri as a Model for Bacterial ColonizationR37AI050661 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI MARGARET J MC FALL-NGAI, Edward G Ruby · 2018 to 2026
$5.4M
Vibrio fischeri as a model of Bacterial ColonizationR01AI050661 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2002 to 2016
$5.0M
Vibrio Virulence Determinants in a Benign ColonizationR01OD011024 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2012 to 2020
$3.9M
Dynamics and control over host-associated biofilm formation and dispersalR01GM114288 · NIGMS · LOYOLA UNIVERSITY CHICAGO · PI VISICK, KAREN L · 2015 to 2018
$1.2M
National Institute of Health GM114288National Institute of Health R01 OD11024National Institute of Health R37 AI150661NIAID NIH HHS R01 AI050661NIAID NIH HHS R37 AI050661NIGMS NIH HHS R01 GM114288NIH HHS R01 OD011024
6 · The paper itself

Abstract

Among horizontally acquired symbioses, the mechanisms underlying microbial strain- and species-level specificity remain poorly understood. Here, confocal-microscopy analyses and genetic manipulation of the squid-vibrio association revealed quantitative differences in a symbiont's capacity to interact with the host during initial engagement. Specifically, dominant strains of Vibrio fischeri, 'D-type', previously named for their dominant, single-strain colonization of the squid's bioluminescent organ, were compared with 'S-type', or 'sharing', strains, which can co-colonize the organ. These D-type strains typically: (i) formed aggregations of 100s-1000s of cells on the light-organ surface, up to 3 orders of magnitude larger than those of S-type strains; (ii) showed dominance in co-aggregation experiments, independent of inoculum size or strain proportion; (iii) perturbed larger areas of the organ's ciliated surface; and, (iv) appeared at the pore of the organ approximately 4×s more quickly than S-type strains. At least in part, genes responsible for biofilm synthesis control the hyperaggregation phenotype of a D-type strain. Other marine vibrios produced relatively small aggregations, while an array of marine Gram-positive and -negative species outside of the Vibrionaceae did not attach to the organ's surface. These studies provide insight into the impact of strain variation on early events leading to establishment of an environmentally acquired symbiosis.

Identifiers

PMID30136358
PMCPMC6386636
OpenAlexW2888234324

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.