Evidence map›Paper›PMID 30136084›Full record

ArticleActa neuropathologica2018

Divergent brain gene expression patterns associate with distinct cell-specific tau neuropathology traits in progressive supranuclear palsy.

Mariet Allen, Xue Wang, Daniel J Serie, Samantha L Strickland, Jeremy D Burgess, Shunsuke Koga, Curtis S Younkin, Thuy T Nguyen, Kimberly G Malphrus, Sarah J Lincoln and 15 more

Open access · hybridAbstract read
In one paragraph

Article in Acta neuropathologica, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 2 pooled it
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 2 syntheses or guidelines pooled it, 63 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 1 country.

Mariet AllenDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Xue WangDepartment of Health Sciences Research, Mayo Clinic, Jacksonville, FL, 32224, USA.
Daniel J SerieDepartment of Health Sciences Research, Mayo Clinic, Jacksonville, FL, 32224, USA.
Samantha L StricklandDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Jeremy D BurgessDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Shunsuke KogaDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Curtis S YounkinDivision of Information Technology, Mayo Clinic, Jacksonville, FL, 32224, USA.
Thuy T NguyenDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Kimberly G MalphrusDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Sarah J LincolnDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Melissa AlampreseBanner Behavior Health, Phoenix, AZ, 85016, USA.
Kuixi ZhuThe Center for Innovation in Brain Sciences, University of Arizona, Tucson, AZ, 85721, USA.
Rui ChangThe Center for Innovation in Brain Sciences, University of Arizona, Tucson, AZ, 85721, USA.
Minerva M CarrasquilloDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Naomi KouriDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Melissa E MurrayDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Joseph S ReddyDepartment of Health Sciences Research, Mayo Clinic, Jacksonville, FL, 32224, USA.
Cory FunkInstitute for Systems Biology, 401 Terry Avenue N, Seattle, WA, 98109, USA.
Nathan D PriceInstitute for Systems Biology, 401 Terry Avenue N, Seattle, WA, 98109, USA.
Todd E GoldeDepartment of Neuroscience, Center for Translational Research in Neurodegenerative Disease, McKnight Brain Institute, University of Florida, Gainesville, FL, 32610, USA.
Steven G YounkinDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Yan W AsmannDepartment of Health Sciences Research, Mayo Clinic, Jacksonville, FL, 32224, USA.
Julia E CrookDepartment of Health Sciences Research, Mayo Clinic, Jacksonville, FL, 32224, USA.
Dennis W DicksonDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA.
Nilüfer Ertekin-TanerDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, 32224, USA. taner.nilufer@mayo.edu.ORCID 0000-0003-4436-8889
Mayo Clinic in Florida · USInstitute for Systems Biology · USUniversity of Arizona · USBanner Health · USJacksonville College · USUniversity of Florida · US

Funding

THE PGRN/TDP-43 AXIS IN ALZHEIMER?S DISEASE AND NEURODEGENERATIONP50AG016574 · NIA · MAYO CLINIC ROCHESTER · PI BU, GUOJUN · 1999 to 2018
$36.9M
Research Education ComponentP30AG019610 · NIA · SUN HEALTH RESEARCH INSTITUTE · PI GONZALEZ HERNANDEZ, GRACIELA · 2001 to 2020
$32.5M
Integrating the exposome and methylome to inform brain molecular changes in ADRD across established diverse cohorts.U01AG046139 · NIA · UNIVERSITY OF FLORIDA · PI ERTEKIN-TANER, NILUFER, PETERS, METTE · 2013 to 2022
$24.6M
Integrative translational discovery of vascular risk factors in aging and dementiaRF1AG051504 · NIA · MAYO CLINIC JACKSONVILLE · PI BU, GUOJUN, ERTEKIN-TANER, NILUFER · 2015 to 2019
$9.8M
National Brain and Tissue Resource for Parkinson's Disease and Related DisordersU24NS072026 · NINDS · BANNER SUN HEALTH RESEARCH INSTITUTE · PI BEACH, THOMAS G · 2011 to 2015
$7.8M
Project 2: Identifying genes and Pathways that impact Tau Toxicity in FTDU54NS100693 · NINDS · MAYO CLINIC JACKSONVILLE · PI DICKSON, DENNIS WILLIAM · 2016 to 2020
$6.2M
Immune-Mediated Mechanisms Underlying CNS Abeta ClearanceR01AG018454 · NIA · UNIVERSITY OF FLORIDA · PI GOLDE, TODD E · 2000 to 2018
$5.3M
Building Novel Predictive Networks for high-throughput, in-silico Key Driver Prioritization to Enhance Drug Target Discovery in AMP-AD and M2OVE-ADRF1AG057457 · NIA · UNIVERSITY OF ARIZONA · PI BRADSHAW, ELIZABETH M, CHANG, RUI · 2017 to 2019
$2.3M
Gene discovery in PSP by transcriptome, neuropathology and sequence analysisR01NS080820 · NINDS · MAYO CLINIC JACKSONVILLE · PI ERTEKIN-TANER, NILUFER · 2013 to 2017
$1.8M
Genome wide association study of gene expression levels in Alzheimer's diseaseR01AG032990 · NIA · MAYO CLINIC JACKSONVILLE · PI ERTEKIN-TANER, NILUFER · 2009 to 2011
$932k
NIA NIH HHS P30 AG019610NIA NIH HHS P50 AG0016574NIA NIH HHS P50 AG016574NIA NIH HHS R01 AG018454NIA NIH HHS R01 AG032990NIA NIH HHS RF1 AG051504NIA NIH HHS RF1 AG057457NIA NIH HHS RF AG051504NIA NIH HHS U01 AG046139NINDS NIH HHS R01 NS080820NINDS NIH HHS U24 NS072026NINDS NIH HHS U54 NS100693
6 · The paper itself

Abstract

Progressive supranuclear palsy (PSP) is a neurodegenerative parkinsonian disorder characterized by tau pathology in neurons and glial cells. Transcriptional regulation has been implicated as a potential mechanism in conferring disease risk and neuropathology for some PSP genetic risk variants. However, the role of transcriptional changes as potential drivers of distinct cell-specific tau lesions has not been explored. In this study, we integrated brain gene expression measurements, quantitative neuropathology traits and genome-wide genotypes from 268 autopsy-confirmed PSP patients to identify transcriptional associations with unique cell-specific tau pathologies. We provide individual transcript and transcriptional network associations for quantitative oligodendroglial (coiled bodies = CB), neuronal (neurofibrillary tangles = NFT), astrocytic (tufted astrocytes = TA) tau pathology, and tau threads and genomic annotations of these findings. We identified divergent patterns of transcriptional associations for the distinct tau lesions, with the neuronal and astrocytic neuropathologies being the most different. We determined that NFT are positively associated with a brain co-expression network enriched for synaptic and PSP candidate risk genes, whereas TA are positively associated with a microglial gene-enriched immune network. In contrast, TA is negatively associated with synaptic and NFT with immune system transcripts. Our findings have implications for the diverse molecular mechanisms that underlie cell-specific vulnerability and disease risk in PSP.

Indexed as

AgedAstrocytesBrain ChemistryFemaleGene ExpressionGene Regulatory NetworksGenome-Wide Association StudyHumansImmune SystemImmunohistochemistryMaleNeurofibrillary TanglesNeuronsProteomeRNASupranuclear Palsy, ProgressiveProteomeRNA

Identifiers

PMID30136084
PMCPMC6208732
OpenAlexW2888370633

What OpenQuestion holds

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.