Evidence map›Paper›PMID 30135306›Full record

ArticleJCI insight2018

Endogenous retrovirus expression is associated with response to immune checkpoint blockade in clear cell renal cell carcinoma.

Anshuman Panda, Aguirre A de Cubas, Mark Stein, Gregory Riedlinger, Joshua Kra, Tina Mayer, Christof C Smith, Benjamin G Vincent, Jonathan S Serody, Kathryn E Beckermann and 3 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in JCI insight, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04273061 (Canadian Atezolizumab Precision Targeting for Immunotherapy Intervention), which is not on this map. Cited by 127 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed, 2 pooled it
14.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04273061 phase2recruitingnot on this mapstarted 2020, after this paper: background citation

Canadian Atezolizumab Precision Targeting for Immunotherapy Intervention

TypeinterventionalSponsorBritish Columbia Cancer AgencyRan2020 to 2027Enrolled200ConditionsBreast Cancer, Lung Cancer, Gastrointestinal Cancer, Genitourinary CancerArmsAtezolizumab
3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 2 syntheses or guidelines pooled it, 172 citations in OpenAlex.

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  3. Transcriptomic Correlates of Tumor Cell PD-L1 Expression and Response to Nivolumab Monotherapy in Metastatic Clear Cell Renal Cell Carcinoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
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67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Anshuman PandaRutgers Cancer Institute of New Jersey, New Brunswick, New Jersey, USA.
Aguirre A de CubasVanderbilt-Ingram Cancer Center, Nashville, Tennessee, USA.
Mark SteinRutgers Cancer Institute of New Jersey, New Brunswick, New Jersey, USA.
Gregory RiedlingerRutgers Cancer Institute of New Jersey, New Brunswick, New Jersey, USA.
Joshua KraRutgers Cancer Institute of New Jersey, New Brunswick, New Jersey, USA.
Tina MayerRutgers Cancer Institute of New Jersey, New Brunswick, New Jersey, USA.
Christof C SmithDepartment of Medicine, Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, USA.
Benjamin G VincentDepartment of Medicine, Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, USA.
Jonathan S SerodyDepartment of Medicine, Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, USA.
Kathryn E BeckermannVanderbilt-Ingram Cancer Center, Nashville, Tennessee, USA.
Shridar GanesanRutgers Cancer Institute of New Jersey, New Brunswick, New Jersey, USA.
Gyan BhanotRutgers Cancer Institute of New Jersey, New Brunswick, New Jersey, USA.
W Kimryn RathmellVanderbilt-Ingram Cancer Center, Nashville, Tennessee, USA.
Rutgers, The State University of New Jersey · USUniversity of North Carolina at Chapel Hill · USVanderbilt University · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Chang S Chan · 1997 to 2026
$94.5M
Tissue Procurement & PathologyP50CA058223 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KATHERINE A. HOADLEY · 1992 to 2026
$59.3M
Vanderbilt Clinical Oncology Research Career Development ProgramK12CA090625 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Debra L. Friedman, Paula Jill Hurley · 2001 to 2026
$16.9M
BIOCHEMICAL &CHEMICAL TRAINING FOR CANCER RESEARCHT32CA009582 · NCI · VANDERBILT UNIVERSITY · PI David K Cortez · 1987 to 2026
$8.8M
Chromatin maintenance in cancer progressionR01CA198482 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DAVIS, IAN J, RATHMELL, WENDY KIMRYN · 2015 to 2019
$2.3M
Enhancing Translational Science via Prospective InvestigationK24CA172355 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RATHMELL, WENDY KIMRYN · 2013 to 2017
$870k
Design and Delivery of Neoantigen-based Tumor VaccinesF30CA225136 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SMITH, CHRISTOF CHIU · 2018 to 2021
$142k
NCI NIH HHS F30 CA225136NCI NIH HHS K12 CA090625NCI NIH HHS K24 CA172355NCI NIH HHS P30 CA016086NCI NIH HHS P30 CA072720NCI NIH HHS P50 CA058223NCI NIH HHS R01 CA198482NCI NIH HHS T32 CA009582
6 · The paper itself

Abstract

Although a subset of clear cell renal cell carcinoma (ccRCC) patients respond to immune checkpoint blockade (ICB), predictors of response remain uncertain. We investigated whether abnormal expression of endogenous retroviruses (ERVs) in tumors is associated with local immune checkpoint activation (ICA) and response to ICB. Twenty potentially immunogenic ERVs (πERVs) were identified in ccRCC in The Cancer Genome Atlas data set, and tumors were stratified into 3 groups based on their expression levels. πERV-high ccRCC tumors showed increased immune infiltration, checkpoint pathway upregulation, and higher CD8+ T cell fraction in infiltrating leukocytes compared with πERV-low ccRCC tumors. Similar results were observed in ER+/HER2- breast, colon, and head and neck squamous cell cancers. ERV expression correlated with expression of genes associated with histone methylation and chromatin regulation, and πERV-high ccRCC was enriched in BAP1 mutant tumors. ERV3-2 expression correlated with ICA in 11 solid cancers, including the 4 named above. In a small retrospective cohort of 24 metastatic ccRCC patients treated with single-agent PD-1/PD-L1 blockade, ERV3-2 expression in tumors was significantly higher in responders compared with nonresponders. Thus, abnormal expression of πERVs is associated with ICA in several solid cancers, including ccRCC, and ERV3-2 expression is associated with response to ICB in ccRCC.

Indexed as

AgedAged, 80 and overAntineoplastic Agents, ImmunologicalB7-H1 AntigenCarcinoma, Renal CellDatasets as TopicDrug Resistance, NeoplasmEndogenous RetrovirusesFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansKidney NeoplasmsMaleMiddle AgedProgrammed Cell Death 1 ReceptorAntineoplastic Agents, ImmunologicalB7-H1 AntigenCD274 protein, humanPDCD1 protein, humanProgrammed Cell Death 1 ReceptorImmunologyImmunotherapyOncology

Identifiers

PMID30135306
PMCPMC6141170
OpenAlexW2888758049

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.