Evidence map›Paper›PMID 30135209›Full record

ArticleThe Journal of biological chemistry2018

Phosphoserine acidic cluster motifs bind distinct basic regions on the μ subunits of clathrin adaptor protein complexes.

Rajendra Singh, Charlotte Stoneham, Christopher Lim, Xiaofei Jia, Javier Guenaga, Richard Wyatt, Joel O Wertheim, Yong Xiong, John Guatelli

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

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  11. Coatopathies: Genetic Disorders of Protein Coats.Annual review of cell and developmental biology · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Rajendra SinghFrom the Department of Medicine, University of California San Diego, La Jolla, California 92093, rks003@ucsd.edu.
Charlotte StonehamFrom the Department of Medicine, University of California San Diego, La Jolla, California 92093.
Christopher Limthe Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06510.
Xiaofei Jiathe Department of Chemistry and Biochemistry, University of Massachusetts, Dartmouth, Massachusetts 02747.
Javier Guenagathe Department of Immunology and Microbiology, Scripps Research Institute, La Jolla, California 92037, and.
Richard Wyattthe Department of Immunology and Microbiology, Scripps Research Institute, La Jolla, California 92037, and.
Joel O WertheimFrom the Department of Medicine, University of California San Diego, La Jolla, California 92093.
Yong Xiongthe Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06510.
John GuatelliFrom the Department of Medicine, University of California San Diego, La Jolla, California 92093, jguatelli@ucsd.edu.
University of California, San Diego · USScripps Research Institute · USYale University · USUniversity of Massachusetts Dartmouth · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Maile Ann Young Karris · 1994 to 2026
$78.4M
Non-Human PrimatesP01AI104722 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WYATT, RICHARD THOMAS · 2014 to 2018
$14.6M
HIV-1 Vpu and BST-2/CD317R37AI081668 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI GUATELLI, JOHN C. · 2014 to 2023
$4.8M
Viral Hijacking of Host Membrane Trafficking PathwaysR01AI102778 · NIAID · YALE UNIVERSITY · PI GUATELLI, JOHN C., XIONG, YONG · 2013 to 2017
$3.0M
Enhancement of Infectivity by HIV-1 Nef via Antagonism of SERINC ProteinsR01AI129706 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI GUATELLI, JOHN C. · 2017 to 2021
$2.8M
Public Health Implications of HIV Transmission NetworksK01AI110181 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WERTHEIM, JOEL OKRENT · 2014 to 2018
$668k
Inferring physico-chemical constraints at individual sites in protein evolutionR21AI115701 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WERTHEIM, JOEL OKRENT · 2015 to 2016
$416k
NIAID NIH HHS K01 AI110181NIAID NIH HHS P01 AI104722NIAID NIH HHS P30 AI036214NIAID NIH HHS R01 AI102778NIAID NIH HHS R01 AI129706NIAID NIH HHS R21 AI115701NIAID NIH HHS R37 AI081668
6 · The paper itself

Abstract

Protein trafficking in the endosomal system involves the recognition of specific signals within the cytoplasmic domains (CDs) of transmembrane proteins by clathrin adaptors. One such signal is the phosphoserine acidic cluster (PSAC), the prototype of which is in the endoprotease furin. How PSACs are recognized by clathrin adaptors has been controversial. We reported previously that HIV-1 Vpu, which modulates cellular immunoreceptors, contains a PSAC that binds to the μ subunits of clathrin adaptor protein (AP) complexes. Here, we show that the CD of furin binds the μ subunits of AP-1 and AP-2 in a phosphorylation-dependent manner. Moreover, we identify a potential PSAC in a cytoplasmic loop of the cellular transmembrane Serinc3, an inhibitor of the infectivity of retroviruses. The two serines within the PSAC of Serinc3 are phosphorylated by casein kinase II and mediate interaction with the μ subunits

Indexed as

Adaptor Protein Complex 1Adaptor Protein Complex 2Amino Acid MotifsAnimalsBinding SitesCloning, MolecularEscherichia coliFurinGene ExpressionHIV-1Human Immunodeficiency Virus ProteinsHumansJurkat CellsKineticsMammalsMembrane GlycoproteinsAdaptor Protein Complex 1Adaptor Protein Complex 2FurinFURIN protein, humanHuman Immunodeficiency Virus ProteinsMembrane Glycoproteinsnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1Neoplasm ProteinsPhosphatidylinositol 4,5-DiphosphatePhosphoserineProtein SubunitsReceptors, Cell SurfaceRecombinant ProteinsSERINC3 protein, humanViral Regulatory and Accessory ProteinsViroporin Proteinsvpu protein, Human immunodeficiency virus 1acidic clusteradaptor proteinclathrinfurinHIV-1 Vpuhost-pathogen interactionhuman immunodeficiency virus (HIV)kineticsmedium subunitmembrane traffickingphosphorylationphosphoserineprotein chemistryprotein complexSerinc3

Identifiers

PMID30135209
PMCPMC6177606
OpenAlexW2888682458

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.