Evidence map›Paper›PMID 30134714›Full record

ArticleThe Journal of chemical physics2018

Improving low-accuracy protein structures using enhanced sampling techniques.

Tianwu Zang, Tianqi Ma, Qinghua Wang, Jianpeng Ma

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in The Journal of chemical physics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Forging tools for refining predicted protein structures.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Tianwu ZangApplied Physics Program and Department of Bioengineering, Rice University, Houston, Texas 77005, USA.
Tianqi MaApplied Physics Program and Department of Bioengineering, Rice University, Houston, Texas 77005, USA.
Qinghua WangVerna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, One Baylor Plaza, BCM-125, Houston, Texas 77030, USA.
Jianpeng MaApplied Physics Program and Department of Bioengineering, Rice University, Houston, Texas 77005, USA.

Funding

New Simulation Methods at Multi-Scales and -ResolutionsR01GM067801 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI MA, JIANPENG · 2003 to 2015
$3.4M
Structural and Functional Study of Influenza Virus HemagglutininR01AI067839 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI WANG, QINGHUA · 2009 to 2013
$1.5M
Molecular Mechanisms of Actin Cytoskeleton DynamicsR01GM116280 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI MA, JIANPENG, WANG, QINGHUA · 2016 to 2019
$1.4M
NIAID NIH HHS R01 AI067839NIGMS NIH HHS R01 GM067801NIGMS NIH HHS R01 GM116280
6 · The paper itself

Abstract

In this paper, we report results of using enhanced sampling and blind selection techniques for high-accuracy protein structural refinement. By combining a parallel continuous simulated tempering (PCST) method, previously developed by Zang

Indexed as

Molecular Dynamics SimulationCaspase 10Caspase 12Protein ConformationTemperatureCaspase 10Caspase 12

Identifiers

PMID30134714
PMCPMC5995690

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.