ArticleApplications in plant sciences2018
Capturing variation in
Article in Applications in plant sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- Insights into lentil diversity, domestication, and the genetic basis of important agronomic traits through resequencing of 238 Lens accessions.The Plant journal : for cell and molecular biology · 2026Article
- EasyGeSe - a resource for benchmarking genomic prediction methods.BMC genomics · 2025Article
- Omics-Driven Strategies for Developing Saline-Smart Lentils: A Comprehensive Review.International journal of molecular sciences · 2024Review
- Complete chloroplast genome of Lens lamottei reveals intraspecies variation among with Lens culinaris.Scientific reports · 2023Article
- CRISPR-Cas9-based repeat depletion for high-throughput genotyping of complex plant genomes.Genome research · 2023Article
- Focusing the GWAS Lens on days to flower using latent variable phenotypes derived from global multienvironment trials.The plant genome · 2023Article
- The Prospects of gene introgression from crop wild relatives into cultivated lentil for climate change mitigation.Frontiers in plant science · 2023Review
- The Key to the Future Lies in the Past: Insights from Grain Legume Domestication and Improvement Should Inform Future Breeding Strategies.Plant & cell physiology · 2022Review
- Legume Pangenome: Status and Scope for Crop Improvement.Plants (Basel, Switzerland) · 2022Review
- Complete chloroplast genome sequence of Lens ervoides and comparison to Lens culinaris.Scientific reports · 2022Article
- An evolutionary look into the history of lentil reveals unexpected diversity.Evolutionary applications · 2022Article
- Supporting in situ conservation of the genetic diversity of crop wild relatives using genomic technologies.Molecular ecology · 2022Review
- Identification of anthracnose race 1 resistance loci in lentil by integrating linkage mapping and genome-wide association study.The plant genome · 2021Article
- Genetic basis for lentil adaptation to summer cropping in northern temperate environments.The plant genome · 2021Article
- A PostgreSQL Tripal solution for large-scale genotypic and phenotypic data.Database : the journal of biological databases and curation · 2021Article
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- Diversity in Surface Microstructures of Trichomes, Epidermal Cells, and Stomata in Lentil Germplasm.Frontiers in plant science · 2021Article
- The History of Lentil (Frontiers in plant science · 2021Article
- Prospects of next generation sequencing in lentil breeding.Molecular biology reports · 2020Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
premise of the studyLentil is an important legume crop with reduced genetic diversity caused by domestication bottlenecks. Due to its large and complex genome, tools for reduced representation sequencing are needed. We developed an exome capture array for use in various genetic diversity studies.
methodsBased on the CDC Redberry draft genome, we developed an exome capture array using multiple sources of transcript resources. The probes were designed to target not only the cultivated lentil, but also wild species. We assessed the utility of the developed method by applying the generated data set to population structure and phylogenetic analyses.
resultsThe data set includes 16 wild lentils and 22 cultivar accessions of lentil. Alignment rates were over 90%, and the genic regions were well represented in the capture array. After stringent filtering, 6.5 million high-quality variants were called, and the data set was used to assess the interspecific relationships within the genus DISCUSSION: The developed exome capture array provides large amounts of genomic data to be used in many downstream analyses. The method will have useful applications in marker-assisted breeding programs aiming to improve the quality of cultivated lentil.
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