Evidence map›Paper›PMID 30128756›Full record

ArticleWorld journal of microbiology & biotechnology2018

Impact of soil salinity on the microbial structure of halophyte rhizosphere microbiome.

Salma Mukhtar, Babur Saeed Mirza, Samina Mehnaz, Muhammad Sajjad Mirza, Joan Mclean, Kauser Abdulla Malik

Abstract read
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In one paragraph

Article in World journal of microbiology & biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
11.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
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  7. Co-inoculation of the endophytesFrontiers in microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Salma MukhtarDepartment of Biological Sciences, Forman Christian College (A Chartered University), Ferozepur Road, Lahore, 54600, Pakistan.
Babur Saeed MirzaDepartment of Biology, Missouri State University, 901 S, National Ave, Springfield, MO, USA.
Samina MehnazDepartment of Biological Sciences, Forman Christian College (A Chartered University), Ferozepur Road, Lahore, 54600, Pakistan.
Muhammad Sajjad MirzaEnvironmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Jhang Road, Faisalabad, Pakistan.
Joan McleanUtah Water Research Laboratory, Department of Civil and Environmental Engineering, Utah State University, Logan, UT, 84322-8200, USA.
Kauser Abdulla MalikDepartment of Biological Sciences, Forman Christian College (A Chartered University), Ferozepur Road, Lahore, 54600, Pakistan. kausermalik@fccollege.edu.pk.
Forman Christian College · PKMissouri State University · USNational Institute for Biotechnology and Genetic Engineering · PKUtah State University · US

Funding

Higher Education Commission, Pakistan Project # HEC (FD/2012/1843)Pakistan Academy of Sciences Project # 5-9/PAS/2012/969
6 · The paper itself

Abstract

The rhizosphere microbiome plays a significant role in the life of plants in promoting plant survival under adverse conditions. However, limited information is available about microbial diversity in saline environments. In the current study, we compared the composition of the rhizosphere microbiomes of the halophytes Urochloa, Kochia, Salsola, and Atriplex living in moderate and high salinity environments (Khewra salt mines; Pakistan) with that of the non-halophyte Triticum. Soil microbiomes analysis using pyrosequencing of 16S rRNA gene indicated that Actinobacteria were dominant in saline soil samples whereas Proteobacteria predominated in non-saline soil samples. Firmicutes, Acidobacteria, Bacteriodetes and Thaumarchaeota were predominant phyla in saline and non-saline soils, whereas Cyanobacteria, Verrucomicrobia, Gemmatimonadetes and the unclassified WPS-2 were less abundant. Sequences from Euryarchaeota, Ignavibacteriae, and Nanohaloarchaeota were identified only from the rhizosphere of halophytes. Dominant halophilic bacteria and archaea identified in this study included Agrococcus, Armatimonadetes gp4, Halalkalicoccus, Haloferula and Halobacterium. Our analysis showed that increases in soil salinity correlated with significant differences in the alpha and beta diversity of the microbial communities across saline and non-saline soil samples. Having a complete inventory of the soil bacteria from different saline environments in Pakistan will help in the discovery of potential inoculants for crops growing on salt-affected land.

Indexed as

SalinitySoil MicrobiologyArchaeaBacteriaDNA, BacterialEcosystemMetagenomicsMicrobiotaPakistanPhylogenyPlant RootsRhizosphereRNA, Ribosomal, 16SSalt-Tolerant PlantsSoilDNA, BacterialRNA, Ribosomal, 16SSoil16S rRNA geneHaloarchaeaHalophilic bacteriaPyrosequencingSoil microbiomeSoil salinity

Identifiers

PMID30128756
OpenAlexW2888349122

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.