Evidence map›Paper›PMID 30127417›Full record

ArticleNature communications2018

The structure of the ubiquitin-like modifier FAT10 reveals an alternative targeting mechanism for proteasomal degradation.

Annette Aichem, Samira Anders, Nicola Catone, Philip Rößler, Sophie Stotz, Andrej Berg, Ricarda Schwab, Sophia Scheuermann, Johanna Bialas, Mira C Schütz-Stoffregen and 4 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 50 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Annette AichemDivision of Immunology, Department of Biology, University of Konstanz, Konstanz, D-78457, Germany.
Samira AndersMax Planck Institute for Developmental Biology, Tübingen, D-72076, Germany.
Nicola CatoneBiotechnology Institute Thurgau at the University of Konstanz, Kreuzlingen, CH-8280, Switzerland.
Philip RößlerMax Planck Institute for Developmental Biology, Tübingen, D-72076, Germany.
Sophie StotzMax Planck Institute for Developmental Biology, Tübingen, D-72076, Germany.
Andrej BergComputational and Theoretical Chemistry, Department of Chemistry, University of Konstanz, Konstanz, D-78457, Germany.ORCID http://orcid.org/0000-0002-5232-1995
Ricarda SchwabDivision of Immunology, Department of Biology, University of Konstanz, Konstanz, D-78457, Germany.
Sophia ScheuermannDivision of Immunology, Department of Biology, University of Konstanz, Konstanz, D-78457, Germany.
Johanna BialasDivision of Immunology, Department of Biology, University of Konstanz, Konstanz, D-78457, Germany.
Mira C Schütz-StoffregenMax Planck Institute for Developmental Biology, Tübingen, D-72076, Germany.
Gunter SchmidtkeDivision of Immunology, Department of Biology, University of Konstanz, Konstanz, D-78457, Germany.
Christine PeterComputational and Theoretical Chemistry, Department of Chemistry, University of Konstanz, Konstanz, D-78457, Germany.ORCID http://orcid.org/0000-0002-1471-5440
Marcus GroettrupDivision of Immunology, Department of Biology, University of Konstanz, Konstanz, D-78457, Germany. Marcus.Groettrup@uni-konstanz.de.ORCID http://orcid.org/0000-0002-5423-6399
Silke WiesnerMax Planck Institute for Developmental Biology, Tübingen, D-72076, Germany. silke.wiesner@ur.de.ORCID http://orcid.org/0000-0003-0015-0167
University of Konstanz · DEMax Planck Institute for Developmental Biology · DEBiotechnology Institute Thurgau · CH

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) INST 35/1134-1 FUGGDeutsche Forschungsgemeinschaft (German Research Foundation) KoRS-CBDeutsche Forschungsgemeinschaft (German Research Foundation) SFB969, project B09Deutsche Forschungsgemeinschaft (German Research Foundation) SFB969, project C01Max-Planck-Gesellschaft (Max Planck Society) n.a.Velux Stiftung grant 1029
6 · The paper itself

Abstract

FAT10 is a ubiquitin-like modifier that directly targets proteins for proteasomal degradation. Here, we report the high-resolution structures of the two individual ubiquitin-like domains (UBD) of FAT10 that are joined by a flexible linker. While the UBDs of FAT10 show the typical ubiquitin-fold, their surfaces are entirely different from each other and from ubiquitin explaining their unique binding specificities. Deletion of the linker abrogates FAT10-conjugation while its mutation blocks auto-FAT10ylation of the FAT10-conjugating enzyme USE1 but not bulk conjugate formation. FAT10- but not ubiquitin-mediated degradation is independent of the segregase VCP/p97 in the presence but not the absence of FAT10's unstructured N-terminal heptapeptide. Stabilization of the FAT10 UBDs strongly decelerates degradation suggesting that the intrinsic instability of FAT10 together with its disordered N-terminus enables the rapid, joint degradation of FAT10 and its substrates without the need for FAT10 de-conjugation and partial substrate unfolding.

Indexed as

ProteolysisAmino Acid SequenceAmino Acid SubstitutionCysteineHEK293 CellsHeLa CellsHumansModels, MolecularProteasome Endopeptidase ComplexProtein DomainsProtein StabilityUbiquitinUbiquitinsValosin Containing ProteinCysteineProteasome Endopeptidase ComplexUBD protein, humanUbiquitinUbiquitinsValosin Containing Protein

Identifiers

PMID30127417
PMCPMC6102260
OpenAlexW2886310907

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.