Evidence map›Paper›PMID 30127017›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Conservation of coactivator engagement mechanism enables small-molecule allosteric modulators.

Andrew R Henderson, Madeleine J Henley, Nicholas J Foster, Amanda L Peiffer, Matthew S Beyersdorf, Kevon D Stanford, Steven M Sturlis, Brian M Linhares, Zachary B Hill, James A Wells and 4 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Elongin functions as a loading factor for Mediator at ATF6α-regulated ER stress response genes.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Review
  11. Article
  12. Norstictic Acid Is a Selective Allosteric Transcriptional Regulator.Journal of the American Chemical Society · 2021
    Article
  13. Article
  14. Drugging Fuzzy Complexes in Transcription.Frontiers in molecular biosciences · 2021
    Article
  15. Unexpected specificity within dynamic transcriptional protein-protein complexes.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Review
  17. Article
  18. Twenty years of Mediator complex structural studies.Biochemical Society transactions · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Andrew R HendersonLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Madeleine J HenleyLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Nicholas J FosterLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Amanda L PeifferLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Matthew S BeyersdorfLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Kevon D StanfordLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Steven M SturlisLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Brian M LinharesDepartment of Biophysics, University of Michigan, Ann Arbor, MI 48109.
Zachary B HillDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.
James A WellsDepartment of Pharmaceutical Chemistry, University of California, San Francisco, CA 94158.ORCID 0000-0001-8267-5519
Tomasz CierpickiProgram in Chemical Biology, University of Michigan, Ann Arbor, MI 48109.
Charles L BrooksProgram in Chemical Biology, University of Michigan, Ann Arbor, MI 48109.
Carol A FierkeProgram in Chemical Biology, University of Michigan, Ann Arbor, MI 48109.
Anna K MappLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109; amapp@umich.edu.ORCID 0000-0003-0791-8327
University of Michigan · USUniversity of California, San Francisco · US

Funding

STRUCTURE/FUNCTION OF ZINC METALLOPROTEINSR01GM040602 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FIERKE, CAROL A · 1993 to 2017
$6.0M
Probing Transcriptional Activation at the Molecular Level - Equipment SupplementR01GM065330 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MAPP, ANNA K. · 2002 to 2019
$4.2M
NIGMS NIH HHS R01 GM040602NIGMS NIH HHS R01 GM065330
6 · The paper itself

Abstract

Transcriptional coactivators are a molecular recognition marvel because a single domain within these proteins, the activator binding domain or ABD, interacts with multiple compositionally diverse transcriptional activators. Also remarkable is the structural diversity among ABDs, which range from conformationally dynamic helical motifs to those with a stable core such as a β-barrel. A significant objective is to define conserved properties of ABDs that allow them to interact with disparate activator sequences. The ABD of the coactivator Med25 (activator interaction domain or AcID) is unique in that it contains secondary structural elements that are on both ends of the spectrum: helices and loops that display significant conformational mobility and a seven-stranded β-barrel core that is structurally rigid. Using biophysical approaches, we build a mechanistic model of how AcID forms binary and ternary complexes with three distinct activators; despite its static core, Med25 forms short-lived, conformationally mobile, and structurally distinct complexes with each of the cognate partners. Further, ternary complex formation is facilitated by allosteric communication between binding surfaces on opposing faces of the β-barrel. The model emerging suggests that the conformational shifts and cooperative binding is mediated by a flexible substructure comprised of two dynamic helices and flanking loops, indicating a conserved mechanistic model of activator engagement across ABDs. Targeting a region of this substructure with a small-molecule covalent cochaperone modulates ternary complex formation. Our data support a general strategy for the identification of allosteric small-molecule modulators of ABDs, which are key targets for mechanistic studies as well as therapeutic applications.

Indexed as

Allosteric RegulationHumansMediator ComplexPeptidesProtein DomainsProtein Structure, QuaternaryProtein Structure, SecondaryMED25 protein, humanMediator ComplexPeptidesallosteric modulatorMed25protein–protein interactionstranscriptional coactivator

Identifiers

PMID30127017
PMCPMC6130367
OpenAlexW2888087623

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.