Evidence map›Paper›PMID 30126059›Full record

ArticleTransboundary and emerging diseases2019

Molecular characterization of whole genome sequence of infectious bronchitis virus 624I genotype confirms the close relationship with Q1 genotype.

Andrea Laconi, Valeria Listorti, Giovanni Franzo, Mattia Cecchinato, Clive Naylor, Caterina Lupini, Elena Catelli

Abstract read
In one paragraph

Article in Transboundary and emerging diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Animal Coronaviruses in the Light of COVID-19.Journal of veterinary research · 2020
    Review
  5. Review
  6. Article
  7. Article
  8. Molecular and biological characteristics of the infectious bronchitis virus TC07-2/GVI-1 lineage isolated in China.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2019
    Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Andrea LaconiDepartment of Pathobiology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0003-0102-7021
Valeria ListortiDepartment of Veterinary Medical Sciences, University of Bologna, Ozzano dell'Emilia, BO, Italy.
Giovanni FranzoDepartment of Animal Medicine, Production and Health, University of Padua, Legnaro, PD, Italy.ORCID http://orcid.org/0000-0003-2991-217X
Mattia CecchinatoDepartment of Animal Medicine, Production and Health, University of Padua, Legnaro, PD, Italy.
Clive NaylorDepartment of Infection Biology, University of Liverpool, Leahurst Campus, Liverpool, Cheshire, UK.
Caterina LupiniDepartment of Veterinary Medical Sciences, University of Bologna, Ozzano dell'Emilia, BO, Italy.
Elena CatelliDepartment of Veterinary Medical Sciences, University of Bologna, Ozzano dell'Emilia, BO, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infectious Bronchitis virus (IBV) genotype Q1 was detected for the first time in China in 1996, and then spread worldwide. The first report of Q1 genotype in Italy occurred in 2011 and a deep molecular investigation of a Q1 isolated in Italy in 2013 has led to speculation regarding the origin of this genotype. Phylogenetic analysis of the S1 sequence of a Q1 Italian strain revealed a close relationship with sequences of the 624I strains circulating in Italy in the early 1990s and this led to the idea that 624I was an ancestor of the Q1 genotype. Despite the fact that most heterogeneity of IBVs occurs in the S1 gene, the sequence analysis of this gene alone was not sufficient to confirm or deny this hypothesis. In the present study, an Italian 624I (gammaCoV/AvCov/Ck/Italy/IP14425/96) was fully sequenced for the first time and compared to all available complete Q1 genome sequences. This analysis confirmed the genetic correlation between GammaCoV/AvCov/Ck/Italy/IP14425/96 and Q1 strains, suggesting a common origin between 624I and Q1 genotypes.

Indexed as

ChickensGenome, ViralAnimalsCoronavirus InfectionsGenotypeInfectious bronchitis virusItalyPhylogenyPoultry DiseasesViral ProteinsWhole Genome SequencingViral Proteins

Identifiers

PMID30126059
PMCPMC7168539

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.