Evidence map›Paper›PMID 30125614›Full record

ArticleJournal of virological methods2018

The stability of HIV-1 nucleic acid in whole blood and improved detection of HIV-1 in alternative specimen types when compared to Dried Blood Spot (DBS) specimens.

Cheryl Jennings, Brian Harty, Salvatore R Scianna, Suzanne Granger, Amy Couzens, Daniel Zaccaro, James W Bremer

Abstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of virological methods, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Cheryl JenningsRush Medical College, Department of Microbial Pathogens and Immunity, Chicago, IL, USA. Electronic address: cheryl_jennings@rush.edu.
Brian HartyNew England Research Institute, Boston, MA, USA.
Salvatore R SciannaRush Medical College, Department of Microbial Pathogens and Immunity, Chicago, IL, USA.
Suzanne GrangerNew England Research Institute, Boston, MA, USA.
Amy CouzensRTI International, Research Triangle Park, NC, USA.
Daniel ZaccaroRTI International, Research Triangle Park, NC, USA.
James W BremerRush Medical College, Department of Microbial Pathogens and Immunity, Chicago, IL, USA.
Rush University · USNew England Research (United States) · USRTI International · US

Funding

NIAID NIH HHS HHSN272201200023C
6 · The paper itself

Abstract

backgroundCommercially-available kits for HIV-1 detection include instructions for detecting HIV-1 in plasma and DBS, but don't support other specimen types.

objectivesShow quantitative stability of HIV-1 total nucleic acid (TNA) in blood and improved HIV-1 detection in alternative specimen types. STUDY

designWhole blood and DBS specimens, tested as part of an external quality assurance program for qualitative HIV-1 detection, were used to evaluated error rates (false negative [FN], false positive [FP] and indeterminant [IND] results) across assays (internally developed [IH], Roche Amplicor [RA], and Roche TaqMan Qual [TQ]) and specimen types (frozen whole blood [BLD], DBS and cell pellets [PEL]). A modified Roche TaqMan HIV-1 assay was used to quantify HIV-1 TNA.

resultsSignificantly higher error rates were noted in DBS across all of the assays (4% vs. 0% for DBS and PEL, IH, p = 0.005; 4% vs. 0.1% for DBS and PEL, RA, p < 0.001; 10% vs. 1% for DBS and PEL or BLD, TQ, p < 0.001). HIV TNA concentration is stable in BLD (day 1 vs. day 10, p = 0.39) and higher than DBS (p < 0.001).

conclusionsTransporting refrigerated whole blood for centralized processing into alternative specimen types will improve the sensitivitiy of HIV-1 detection in samples with low virus loads.

Indexed as

Diagnostic ErrorsHIV-1HIV InfectionsRNA, ViralSensitivity and SpecificitySpecimen HandlingRNA, ViralHIV-1 DBSHIV-1 detectionHIV-1 stability

Identifiers

PMID30125614
PMCPMC6151138
OpenAlexW2886341526

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.