Evidence map›Paper›PMID 30125294›Full record

ArticlePloS one2018

Functional characterization of a lytic polysaccharide monooxygenase from the thermophilic fungus Myceliophthora thermophila.

Marco A S Kadowaki, Anikó Várnai, John-Kristian Jameson, Ana E T Leite, Antonio J Costa-Filho, Patricia S Kumagai, Rolf A Prade, Igor Polikarpov, Vincent G H Eijsink

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Lytic Polysaccharide Monooxygenase fromInternational journal of molecular sciences · 2021
    Article
  3. Review
  4. Review
  5. LPMOInternational journal of molecular sciences · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Marco A S KadowakiDepartment of Physics and Interdisciplinary Science, São Carlos Institute of Physics, University of São Paulo, São Carlos, São Paulo, Brazil.
Anikó VárnaiFaculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway.
John-Kristian JamesonFaculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway.
Ana E T LeiteDepartment of Physics and Interdisciplinary Science, São Carlos Institute of Physics, University of São Paulo, São Carlos, São Paulo, Brazil.
Antonio J Costa-FilhoDepartment of Physics, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, University of São Paulo, Ribeirão Preto, São Paulo, Brazil.
Patricia S KumagaiDepartment of Physics and Interdisciplinary Science, São Carlos Institute of Physics, University of São Paulo, São Carlos, São Paulo, Brazil.ORCID 0000-0001-7546-3091
Rolf A PradeDepartments of Biochemistry & Molecular Biology and Microbiology & Molecular Genetics, Oklahoma State University, Stillwater, OK, United States.
Igor PolikarpovDepartment of Physics and Interdisciplinary Science, São Carlos Institute of Physics, University of São Paulo, São Carlos, São Paulo, Brazil.ORCID 0000-0001-9496-4174
Vincent G H EijsinkFaculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences (NMBU), Ås, Norway.
Universidade de São Paulo · BRNorwegian University of Life Sciences · NOOklahoma State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermophilic fungi are a promising source of thermostable enzymes able to hydrolytically or oxidatively degrade plant cell wall components. Among these enzymes are lytic polysaccharide monooxygenases (LPMOs), enzymes capable of enhancing biomass hydrolysis through an oxidative mechanism. Myceliophthora thermophila (synonym Sporotrichum thermophile), an Ascomycete fungus, expresses and secretes over a dozen different LPMOs. In this study, we report the overexpression and biochemical study of a previously uncharacterized LPMO (MtLPMO9J) from M. thermophila M77 in Aspergillus nidulans. MtLPMO9J is a single-domain LPMO and has 63% sequence similarity with the catalytic domain of NcLPMO9C from Neurospora crassa. Biochemical characterization of MtLPMO9J revealed that it performs C4-oxidation and is active against cellulose, soluble cello-oligosaccharides and xyloglucan. Moreover, biophysical studies showed that MtLPMO9J is structurally stable at pH above 5 and at temperatures up to 50°C. Importantly, LC-MS analysis of the peptides after tryptic digestion of the recombinantly produced protein revealed not only the correct processing of the signal peptide and methylation of the N-terminal histidine, but also partial autoxidation of the catalytic center. This shows that redox conditions need to be controlled, not only during LPMO reactions but also during protein production, to protect LPMOs from oxidative damage.

Indexed as

Amino Acid SequenceAscomycotaChromatography, High Pressure LiquidCloning, MolecularFungal PolysaccharidesMixed Function OxygenasesPhylogenySequence Analysis, DNAStructure-Activity RelationshipSubstrate SpecificityTandem Mass SpectrometryThermodynamicsFungal PolysaccharidesMixed Function Oxygenases

Identifiers

PMID30125294
PMCPMC6101365
OpenAlexW2888449126

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.