Evidence map›Paper›PMID 30123929›Full record

ArticleThe protein journal2018

Characterization of a Theme C Glycoside Hydrolase Family 9 Endo-Beta-Glucanase from a Biogas Reactor Metagenome.

Carola Schröder, Christin Burkhardt, Philip Busch, Georg Schirrmacher, Jörg Claren, Garabed Antranikian

Abstract read
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Article in The protein journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Insight into CAZymes ofInternational journal of molecular sciences · 2022
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Carola SchröderInstitute of Technical Microbiology, Hamburg University of Technology (TUHH), 21073, Hamburg, Germany.
Christin BurkhardtInstitute of Technical Microbiology, Hamburg University of Technology (TUHH), 21073, Hamburg, Germany.
Philip BuschInstitute of Technical Microbiology, Hamburg University of Technology (TUHH), 21073, Hamburg, Germany.
Georg SchirrmacherClariant Produkte (Deutschland) GmbH, Group Biotechnology, 81477, Munich, Germany.
Jörg ClarenClariant Produkte (Deutschland) GmbH, Group Biotechnology, 81477, Munich, Germany.
Garabed AntranikianInstitute of Technical Microbiology, Hamburg University of Technology (TUHH), 21073, Hamburg, Germany. antranikian@tuhh.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

From a biogas reactor metagenome an ORF (bp_cel9A) encoding a bacterial theme C glycoside hydrolase family 9 (GH9) enzyme was recombinantly produced in E. coli BL21 pQE-80L. BP_Cel9A exhibited ≤ 55% identity to annotated sequences. Subsequently, the enzyme was purified to homogeneity by affinity chromatography. The endo-beta-glucanase BP_Cel9A hydrolyzed the beta-1,3-1,4-linked barley beta-glucan with 24 U/mg at 30 °C and pH 6.0. More than 62% of activity was measured between 10 and 40 °C. Lichenan and xyloglucan were hydrolyzed with 67% and 40% of activity, respectively. The activity towards different substrates varied with different temperatures. However, the enzyme activity on CMC was extremely low (> 1%). In contrast to BP_Cel9A, most GH9 glucanases act preferably on crystalline or soluble cellulose with only side activities towards related substrates. The addition of calcium or magnesium enhanced the activity of BP_Cel9A, especially at higher temperatures. EDTA inhibited the enzyme, whereas EGTA had no effect, suggesting that Mg

Indexed as

BiofuelsBioreactorsMetagenomeGlucansGlycoside HydrolasesRecombinant ProteinsXylansBiofuelsGlucansGlycoside HydrolaseslicheninRecombinant ProteinsXylansxyloglucanBarley beta-glucanCalciumEndo-beta-glucanaseGlycoside hydrolase family 9Magnesium

Identifiers

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.