Evidence map›Paper›PMID 30122539›Full record

ArticleAmerican journal of human genetics2018

De Novo Mutations of CCNK Cause a Syndromic Neurodevelopmental Disorder with Distinctive Facial Dysmorphism.

Yanjie Fan, Wu Yin, Bing Hu, Antonie D Kline, Victor Wei Zhang, Desheng Liang, Yu Sun, Lili Wang, Sha Tang, Zöe Powis and 11 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in American journal of human genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. BCL11B-related disease: a single phenotypic entity?European journal of human genetics : EJHG · 2025
    Pooled it
  2. Article
  3. Article
  4. Macrocephaly and Finger Changes: A Narrative Review.International journal of molecular sciences · 2024
    Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Cyclin-dependent kinases and rare developmental disorders.Orphanet journal of rare diseases · 2020
    Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 2 countries.

Yanjie FanDepartment of Pediatric Endocrinology/Genetics, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai Institute for Pediatric Research, Shanghai 200092, China.
Wu YinHefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences, University of Science and Technology of China, Hefei 230027, China; CAS Key Laboratory of Brain Function and Disease, School of Life Sciences, University of Science and Technology of China, Hefei 230027, China.
Bing HuHefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences, University of Science and Technology of China, Hefei 230027, China; CAS Key Laboratory of Brain Function and Disease, School of Life Sciences, University of Science and Technology of China, Hefei 230027, China.
Antonie D KlineHarvey Institute for Human Genetics, Greater Baltimore Medical Center, Baltimore, MD 21204, USA.
Victor Wei ZhangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; AmCare Genomics Lab, GuangZhou 510300, China.
Desheng LiangState Key Laboratory of Medical Genetics, Central South University, Changsha, Hunan 410008, China.
Yu SunDepartment of Pediatric Endocrinology/Genetics, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai Institute for Pediatric Research, Shanghai 200092, China.
Lili WangDepartment of Pediatric Endocrinology/Genetics, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai Institute for Pediatric Research, Shanghai 200092, China.
Sha TangAmbry Genetics, Aliso Viejo, CA 92656, USA.
Zöe PowisAmbry Genetics, Aliso Viejo, CA 92656, USA.
Lei LiHefei National Laboratory for Physical Sciences at the Microscale, School of Life Sciences, University of Science and Technology of China, Hefei 230027, China; CAS Key Laboratory of Brain Function and Disease, School of Life Sciences, University of Science and Technology of China, Hefei 230027, China.
Huifang YanDepartment of Pediatrics, Peking University First Hospital, Beijing 100034, China.
Zhen ShiDepartment of Pediatrics, Peking University First Hospital, Beijing 100034, China.
Xiaoping YangDepartment of Pediatrics, Peking University First Hospital, Beijing 100034, China; Department of Neurology, First Hospital of Shanxi Medical University, Taiyuan, Shanxi Province 030001, China.
Yinyin ChenDepartment of Pediatrics, Peking University First Hospital, Beijing 100034, China; Department of Neurology, First Hospital of Shanxi Medical University, Taiyuan, Shanxi Province 030001, China.
Jingmin WangDepartment of Pediatrics, Peking University First Hospital, Beijing 100034, China.
Yuwu JiangDepartment of Pediatrics, Peking University First Hospital, Beijing 100034, China.
Hu TanState Key Laboratory of Medical Genetics, Central South University, Changsha, Hunan 410008, China.
Xuefan GuDepartment of Pediatric Endocrinology/Genetics, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai Institute for Pediatric Research, Shanghai 200092, China.
Lingqian WuState Key Laboratory of Medical Genetics, Central South University, Changsha, Hunan 410008, China. Electronic address: wulingqian@sklmg.edu.cn.
Yongguo YuDepartment of Pediatric Endocrinology/Genetics, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai Institute for Pediatric Research, Shanghai 200092, China. Electronic address: yuyongguo@shsmu.edu.cn.
Shanghai Jiao Tong University · CNPeking University · CNCentral South University · CNUniversity of Science and Technology of China · CNAmbry Genetics (United States) · USShanxi Medical University · CNBaylor College of Medicine · USGreater Baltimore Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neurodevelopment is a transcriptionally orchestrated process. Cyclin K, a regulator of transcription encoded by CCNK, is thought to play a critical role in the RNA polymerase II-mediated activities. However, dysfunction of CCNK has not been linked to genetic disorders. In this study, we identified three unrelated individuals harboring de novo heterozygous copy number loss of CCNK in an overlapping 14q32.3 region and one individual harboring a de novo nonsynonymous variant c.331A>G (p.Lys111Glu) in CCNK. These four individuals, though from different ethnic backgrounds, shared a common phenotype of developmental delay and intellectual disability (DD/ID), language defects, and distinctive facial dysmorphism including high hairline, hypertelorism, thin eyebrows, dysmorphic ears, broad nasal bridge and tip, and narrow jaw. Functional assay in zebrafish larvae showed that Ccnk knockdown resulted in defective brain development, small eyes, and curly spinal cord. These defects were partially rescued by wild-type mRNA coding CCNK but not the mRNA with the identified likely pathogenic variant c.331A>G, supporting a causal role of CCNK variants in neurodevelopmental disorders. Taken together, we reported a syndromic neurodevelopmental disorder with DD/ID and facial characteristics caused by CCNK variations, possibly through a mechanism of haploinsufficiency.

Indexed as

Abnormalities, MultipleAdolescentAnimalsChildChild, PreschoolCraniofacial AbnormalitiesCyclinsDevelopmental DisabilitiesFemaleHaploinsufficiencyHeterozygoteHumansHypertelorismIntellectual DisabilityMaleMuscular AtrophyCCNK protein, humanCyclinsCCNKde novo mutationsdevelopmental delay/intellectual disabilityfacial dysmorphismzebrafish model

Identifiers

PMID30122539
PMCPMC6128244
OpenAlexW2886259818

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.