Evidence map›Paper›PMID 30122475›Full record

ArticleCell stem cell2018

Neutralizing Gatad2a-Chd4-Mbd3/NuRD Complex Facilitates Deterministic Induction of Naive Pluripotency.

Nofar Mor, Yoach Rais, Daoud Sheban, Shani Peles, Alejandro Aguilera-Castrejon, Asaf Zviran, Dalia Elinger, Sergey Viukov, Shay Geula, Vladislav Krupalnik and 20 more

Open access · greenAbstract read
In one paragraph

Article in Cell stem cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 74 citations in OpenAlex.

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  17. HGG advances · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

30 authors at 9 institutions in 5 countries.

Nofar MorDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel.
Yoach RaisDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel. Electronic address: yoach.rais@gmail.com.
Daoud ShebanDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel; Department of Immunology, Weizmann Institute of Science, Rehovot, Israel.
Shani PelesDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel.
Alejandro Aguilera-CastrejonDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel.
Asaf ZviranDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel; New York Genome Center, New York, NY, USA.
Dalia ElingerThe Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science, Rehovot, Israel.
Sergey ViukovDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel.
Shay GeulaDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel.
Vladislav KrupalnikDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel.
Mirie ZerbibDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel.
Elad ChomskyDepartment of Biological Regulation, Weizmann Institute of Science, Rehovot, Israel.
Lior LasmanDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel.
Tom ShaniDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel.
Jonathan BayerlDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel.
Ohad GafniDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel.
Suhair HannaDepartment of Pediatrics, Rambam Health Care Campus, Haifa, Israel.
Jason D BuenrostroBroad Institute of MIT and Harvard, Cambridge, MA, USA; Harvard Society of Fellows, Harvard University, Cambridge, MA, USA.
Tzachi HagaiEMBL-European Bioinformatics Institute, Wellcome Genome Campus, Cambridge, UK.
Hagit MasikaDepartment of Developmental Biology and Cancer Research, Hebrew University, Jerusalem, Israel.
Gintautas VainoriusInstitute of Molecular Biotechnology (IMBA), Vienna, Austria.
Yehudit BergmanDepartment of Developmental Biology and Cancer Research, Hebrew University, Jerusalem, Israel.
William J GreenleafDepartment of Genetics, Stanford University, Palo Alto, CA, USA; Chan Zuckerberg Biohub, San Francisco, CA, USA.
Miguel A EstebanKey Laboratory of Regenerative Biology, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China.
Ulrich EllingInstitute of Molecular Biotechnology (IMBA), Vienna, Austria.
Yishai LevinThe Nancy and Stephen Grand Israel National Center for Personalized Medicine, Weizmann Institute of Science, Rehovot, Israel.
Rada MassarwaDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel.
Yifat MerblDepartment of Immunology, Weizmann Institute of Science, Rehovot, Israel.
Noa NovershternDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel. Electronic address: noa.novershtern@weizmann.ac.il.
Jacob H HannaDepartment of Molecular Genetics, Weizmann Institute of Science, 234 Herzl, Rehovot 76100, Israel. Electronic address: jacob.hanna@weizmann.ac.il.
Weizmann Institute of Science · ILHebrew University of Jerusalem · ILInstitute of Molecular Biotechnology · ATEuropean Bioinformatics Institute · GBGuangzhou Institutes of Biomedicine and Health · CNHarvard University Press · USNew York Genome Center · USRambam Health Care Campus · ILStanford University · US

Funding

European Research Council 726497
6 · The paper itself

Abstract

Mbd3, a member of nucleosome remodeling and deacetylase (NuRD) co-repressor complex, was previously identified as an inhibitor for deterministic induced pluripotent stem cell (iPSC) reprogramming, where up to 100% of donor cells successfully complete the process. NuRD can assume multiple mutually exclusive conformations, and it remains unclear whether this deterministic phenotype can be attributed to a specific Mbd3/NuRD subcomplex. Moreover, since complete ablation of Mbd3 blocks somatic cell proliferation, we aimed to explore functionally relevant alternative ways to neutralize Mbd3-dependent NuRD activity. We identify Gatad2a, a NuRD-specific subunit, whose complete deletion specifically disrupts Mbd3/NuRD repressive activity on the pluripotency circuitry during iPSC differentiation and reprogramming without ablating somatic cell proliferation. Inhibition of Gatad2a facilitates deterministic murine iPSC reprogramming within 8 days. We validate a distinct molecular axis, Gatad2a-Chd4-Mbd3, within Mbd3/NuRD as being critical for blocking reestablishment of naive pluripotency and further highlight signaling-dependent and post-translational modifications of Mbd3/NuRD that influence its interactions and assembly.

Indexed as

AnimalsCells, CulturedDNA-Binding ProteinsDNA HelicasesFemaleGATA Transcription FactorsInduced Pluripotent Stem CellsMaleMi-2 Nucleosome Remodeling and Deacetylase ComplexMiceMice, Inbred C57BLMice, Inbred CBAMice, KnockoutMice, TransgenicTranscription FactorsDNA-Binding ProteinsDNA HelicasesGatad2a protein, mouseGATA Transcription FactorsMbd3 protein, mouseMi-2beta protein, mouseMi-2 Nucleosome Remodeling and Deacetylase ComplexTranscription FactorsCHD4epigeneticsGatad2aiPSCsMbd3NuRDP66αpluripotencyreprogramming

Identifiers

PMID30122475
PMCPMC7116536
OpenAlexW2886671568

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.