Evidence map›Paper›PMID 30120797›Full record

ReviewGenetic epidemiology2018

The evidential statistical paradigm in genetics.

Lisa J Strug

Abstract readReview
In one paragraph

Review in Genetic epidemiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Lisa J StrugProgram in Genetics and Genome Biology, The Hospital for Sick Children, The Centre for Applied Genomics, The Hospital for Sick Children, Division of Biostatistics and Department of Statistical Sciences, University of Toronto, Toronto, Ontario, Canada.ORCID 0000-0003-0503-9740

Funding

CIHR MOP-258916Cystic Fibrosis Canada 2626Natural Sciences and Engineering Research Council of Canada 2015-03742US CF Foundation STRUG17PO
6 · The paper itself

Abstract

Concerns over reproducibility in research has reinvigorated the discourse on P-values as measures of statistical evidence. In a position statement by the American Statistical Association board of directors, they warn of P-value misuse and refer to the availability of alternatives. Despite the common practice of comparing P-values across different hypothesis tests in genetics, it is well-appreciated that P-values must be interpreted alongside the sample size and experimental design used for their computation. Here, we discuss the evidential statistical paradigm (EP), an alternative to Bayesian and Frequentist paradigms, that has been implemented in human genetics studies. Using applications in Cystic Fibrosis genetic association analyses, and describing recent theoretical developments, we review how to measure statistical evidence using the EP in the presence of covariates, model misspecification, and for composite hypotheses. Novel graphical displays are presented, and software for their computation is highlighted. The implications of multiple hypothesis testing for the EP are delineated in the analyses, demonstrating a view more consistent with scientific reasoning; the EP provides a theoretical justification for replication that is a requirement in genetic association studies. As genetic studies grow in size and complexity, a fresh look at measures of statistical evidence that are sensible amid the analysis of big data are required.

Indexed as

Models, GeneticModels, StatisticalAntiportersBayes TheoremCystic FibrosisGenetic Association StudiesGenetic Predisposition to DiseaseHumansLikelihood FunctionsMeconiumProbabilityReproducibility of ResultsSample SizeSoftwareSulfate TransportersAntiportersSLC26A9 protein, humanSulfate Transportersfoundations of statisticsinferencelikelihood paradigmmultiple hypothesis testingstatistical evidence

Identifiers

PMID30120797
PMCPMC6284518

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.