Evidence map›Paper›PMID 30120375›Full record

ArticleScientific reports2018

Comparison of microbiomes of cold-water corals Primnoa pacifica and Primnoa resedaeformis, with possible link between microbiome composition and host genotype.

Dawn B Goldsmith, Christina A Kellogg, Cheryl L Morrison, Michael A Gray, Robert P Stone, Rhian G Waller, Sandra D Brooke, Steve W Ross

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Dawn B GoldsmithSt. Petersburg Coastal and Marine Science Center, US Geological Survey, St. Petersburg, FL, United States of America.
Christina A KelloggSt. Petersburg Coastal and Marine Science Center, US Geological Survey, St. Petersburg, FL, United States of America. ckellogg@usgs.gov.ORCID 0000-0002-6492-9455
Cheryl L MorrisonLeetown Science Center, US Geological Survey, Kearneysville, WV, United States of America.ORCID 0000-0001-9425-691X
Michael A GraySt. Petersburg Coastal and Marine Science Center, US Geological Survey, St. Petersburg, FL, United States of America.
Robert P StoneAuke Bay Laboratories, Alaska Fisheries Science Center, NOAA Fisheries, 17109, Point Lena Loop Road, Juneau, AK, United States of America.
Rhian G WallerDarling Marine Center, University of Maine, Walpole, ME, United States of America.
Sandra D BrookeCoastal and Marine Laboratory, Florida State University, St. Teresa, FL, United States of America.
Steve W RossCenter for Marine Science, University of North Carolina at Wilmington, Wilmington, NC, United States of America.
United States Geological Survey · USFlorida State University · USNOAA National Marine Fisheries Service · USUniversity of Maine · USUniversity of North Carolina Wilmington · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cold-water corals provide critical habitats for a multitude of marine species, but are understudied relative to tropical corals. Primnoa pacifica is a cold-water coral prevalent throughout Alaskan waters, while another species in the genus, Primnoa resedaeformis, is widely distributed in the Atlantic Ocean. This study examined the V4-V5 region of the 16S rRNA gene after amplifying and pyrosequencing bacterial DNA from samples of these species. Key differences between the two species' microbiomes included a robust presence of bacteria belonging to the Chlamydiales order in most of the P. pacifica samples, whereas no more than 2% of any microbial community from P. resedaeformis comprised these bacteria. Microbiomes of P. resedaeformis exhibited higher diversity than those of P. pacifica, and the two species largely clustered separately in a principal coordinate analysis. Comparison of P. resedaeformis microbiomes from samples collected in two submarine canyons revealed a significant difference between locations. This finding mirrored significant genetic differences among the P. resedaeformis from the two canyons based upon population genetic analysis of microsatellite loci. This study presents the first report of microbiomes associated with these two coral species.

Indexed as

BiodiversityGenotypeMicrobiotaAnimalsAnthozoaBacteriaComputational BiologyMetagenomeMetagenomicsMicrosatellite Repeats

Identifiers

PMID30120375
PMCPMC6098105
OpenAlexW2885942844

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.