Evidence map›Paper›PMID 30120332›Full record

ArticleScientific reports2018

Expression profiling in a mammalian host reveals the strong induction of genes encoding LysM domain-containing proteins in Enterococcus faecium.

Margherita Cacaci, Caroline Giraud, Loic Leger, Riccardo Torelli, Cecilia Martini, Brunella Posteraro, Valentina Palmieri, Maurizio Sanguinetti, Francesca Bugli, Axel Hartke

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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  5. A Genome of TemperateViruses · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Margherita CacaciNormandie Univ, UNICAEN, U2RM-Stress and Virulence, 14000, Caen, France.
Caroline GiraudNormandie Univ, UNICAEN, U2RM-Stress and Virulence, 14000, Caen, France.
Loic LegerNormandie Univ, UNICAEN, U2RM-Stress and Virulence, 14000, Caen, France.
Riccardo TorelliInstitute of Microbiology, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario IRCCS Agostino Gemelli, 00168, Rome, Italy.
Cecilia MartiniInstitute of Microbiology, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario IRCCS Agostino Gemelli, 00168, Rome, Italy.
Brunella PosteraroInstitute of Public Health (Section of Hygiene), Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario IRCCS Agostino Gemelli, 00168, Rome, Italy.
Valentina PalmieriPhysics Institute, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario IRCCS Agostino Gemelli, 00168, Rome, Italy.
Maurizio SanguinettiInstitute of Microbiology, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario IRCCS Agostino Gemelli, 00168, Rome, Italy. maurizio.sanguinetti@unicatt.it.ORCID 0000-0002-9780-7059
Francesca BugliInstitute of Microbiology, Università Cattolica del Sacro Cuore, Fondazione Policlinico Universitario IRCCS Agostino Gemelli, 00168, Rome, Italy.
Axel HartkeNormandie Univ, UNICAEN, U2RM-Stress and Virulence, 14000, Caen, France. axel.hartke@unicaen.fr.ORCID 0000-0002-2537-0062
Università Cattolica del Sacro Cuore · ITNormandie Université · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enterococcus faecium is an important health care-associated pathogen that is difficult to treat due to the high level of antibiotic resistance of clinical isolates. The identification of new potential therapeutic targets or vaccination strategies is therefore urgently needed. In this regard, we carried out a transcriptomic analysis of the E. faecium vancomycin-resistant strain AUS0004, comparing the gene expression of bacteria grown under laboratory conditions and bacteria isolated from an infection site. This analysis highlighted more than 360 genes potentially induced under infection conditions. Owing to their expression profiles, four LysM domain-containing proteins were characterized in more detail. The EFAU004_01059, 1150 and 494 proteins are highly homologous, whereas EFAU004_01209 has a unique domain-architecture and sequence. The analysis of corresponding mutants showed that all LysM proteins played relevant roles in the infection process of E. faecium in mice. The EFAU004_01209 mutant also displayed profound morphological modifications, suggesting it has a role in cell wall synthesis or cell division. Furthermore, the adhesion to kidney cells and growth of the mutant was affected in human urine. All these phenotypes and the surface exposure of EFAU004_01209 identify this protein as an interesting new drug target in E. faecium.

Indexed as

Gene Expression ProfilingGene Expression Regulation, BacterialHost-Pathogen InteractionsAmino Acid SequenceAnimalsBacterial AdhesionBacterial ProteinsEnterococcus faeciumGram-Positive Bacterial InfectionsMiceProtein DomainsSequence DeletionVirulenceBacterial Proteins

Identifiers

PMID30120332
PMCPMC6098018
OpenAlexW2887513705

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.