ArticleScientific reports2018
Complete chloroplast genome sequence of Fagopyrum dibotrys: genome features, comparative analysis and phylogenetic relationships.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
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46 citing papers in PubMed.
- Article
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- Comparative and phylogenetic analysis of the complete chloroplast genome sequences of Melanoseris cyanea group.Scientific reports · 2025Article
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- Phylogenetic relationships, selective pressure and molecular markers development of six species in subfamily Polygonoideae based on complete chloroplast genomes.Scientific reports · 2024Article
- Chloroplast genomes of Caragana tibetica and Caragana turkestanica: structures and comparative analysis.BMC plant biology · 2024Article
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- Complete plastid genome of Iris orchioides and comparative analysis with 19 Iris plastomes.PloS one · 2024Article
- Genomic exploration of Sesuvium sesuvioides: comparative study and phylogenetic analysis within the order Caryophyllales from Cholistan desert, Pakistan.BMC plant biology · 2023Article
- Comparative chloroplast genome analysis of four Polygonatum species insights into DNA barcoding, evolution, and phylogeny.Scientific reports · 2023Article
- Chloroplast genome characteristics and phylogeny of the sinodielsia clade (apiaceae: apioideae).BMC plant biology · 2023Article
- Comparative Analysis of Chloroplast Genome ofInternational journal of molecular sciences · 2023Article
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- Succession of endophytic fungi and rhizosphere soil fungi and their correlation with secondary metabolites inFrontiers in microbiology · 2023Article
- Plastid Phylogenomic Analyses Reveal the Taxonomic Position ofPlants (Basel, Switzerland) · 2022Article
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- Comparative Analyses of Complete Chloroplast Genomes and Karyotypes of AllotetraploidInternational journal of molecular sciences · 2022Article
- Newly reported chloroplast genome of Sinosenecio albonervius Y. Liu & Q. E. Yang and comparative analyses with other Sinosenecio species.BMC genomics · 2022Article
- Article
- Comprehensive analysis of complete chloroplast genome and phylogenetic aspects of ten Ficus species.BMC plant biology · 2022Article
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4 authors.
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Abstract
Fagopyrum dibotrys, belongs to Polygonaceae family, is one of national key conserved wild plants of China with important medicinal and economic values. Here, the complete chloroplast (cp) genome sequence of F. dibotrys is reported. The cp genome size is 159,919 bp with a typical quadripartite structure and consisting of a pair of inverted repeat regions (30,738 bp) separated by large single copy region (85,134 bp) and small single copy region (13,309 bp). Sequencing analyses indicated that the cp genome encodes 131 genes, including 80 protein-coding genes, 28 tRNA genes and 4 rRNA genes. The genome structure, gene order and codon usage are typical of angiosperm cp genomes. We also identified 48 simple sequence repeats (SSR) loci, fewer of them are distributed in the protein-coding sequences compared to the noncoding regions. Comparison of F. dibotrys cp genome to other Polygonaceae cp genomes indicated the inverted repeats (IRs) and coding regions were more conserved than single copy and noncoding regions, and several variation hotspots were detected. Coding gene sequence divergence analyses indicated that five genes (ndhK, petL rpoC2, ycf1, ycf2) were subject to positive selection. Phylogenetic analysis among 42 species based on cp genomes and 50 protein-coding genes indicated a close relationship between F. dibotrys and F. tataricum. In summary, the complete cp genome sequence of F. dibotrys reported in this study will provide useful plastid genomic resources for population genetics and pave the way for resolving phylogenetic relationships of order Caryophyllales.
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