Evidence map›Paper›PMID 30120231›Full record

ArticleEmerging microbes & infections2018

Multiple domains of bacterial and human Lon proteases define substrate selectivity.

Lihong He, Dongyang Luo, Fan Yang, Chunhao Li, Xuegong Zhang, Haiteng Deng, Jing-Ren Zhang

Open access · goldAbstract readComparative Study
In one paragraph

Article in Emerging microbes & infections, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Molecular mechanisms of mitochondrial AAA+ proteases.The Journal of biological chemistry · 2026
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Endogenous and Borrowed Proteolytic Activity in theMicrobiology and molecular biology reviews : MMBR · 2021
    Review
  8. Deletion of theGut microbes · 2020
    Article
  9. Iron Limitation inFrontiers in microbiology · 2020
    Article
  10. Crystal structure of the N domain of Lon protease from Mycobacterium avium complex.Protein science : a publication of the Protein Society · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Lihong HeCenter for Infectious Disease Research, School of Medicine, Tsinghua University, Beijing, China.
Dongyang LuoMOE Key Laboratory of Bioinformatics, Bioinformatics Division, TNLIST and Department of Automation, Tsinghua University, Beijing, China.ORCID http://orcid.org/0000-0001-7041-1655
Fan YangMOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing, 10084, China.
Chunhao LiPhilip Research Institute for Oral Health, School of Dentistry, Virginia Commonwealth University, Richmond, VA, USA.
Xuegong ZhangMOE Key Laboratory of Bioinformatics, Bioinformatics Division, TNLIST and Department of Automation, Tsinghua University, Beijing, China.ORCID http://orcid.org/0000-0002-9684-5643
Haiteng DengMOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing, 10084, China.
Jing-Ren ZhangCenter for Infectious Disease Research, School of Medicine, Tsinghua University, Beijing, China. zhanglab@tsinghua.edu.cn.
Tsinghua University · CNSichuan University · CNVirginia Commonwealth University · US

Funding

Exploring New Virulence Factors of the Oral Spirochete Treponema denticolaR01DE023080 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI Chunhao Chris Li · 2013 to 2026
$5.2M
Chinese Ministry of Science and Technology | Department of S and T for Social Development (Department of S&T for Social Development) 2012CB518702-JRZNational Natural Science Foundation of China (National Science Foundation of China) 31530082-JRZNational Natural Science Foundation of China (National Science Foundation of China) 31728002-JRZNational Natural Science Foundation of China (National Science Foundation of China) 81671972-JRZNIDCR NIH HHS R01 DE023080U.S. Department of Health & Human Services | U.S. Public Health Service (United States Public Health Service) DE023080-CHL
6 · The paper itself

Abstract

The Lon protease selectively degrades abnormal proteins or certain normal proteins in response to environmental and cellular conditions in many prokaryotic and eukaryotic organisms. However, the mechanism(s) behind the substrate selection of normal proteins remains largely unknown. In this study, we identified 10 new substrates of F. tularensis Lon from a total of 21 candidate substrates identified in our previous work, the largest number of novel Lon substrates from a single study. Cross-species degradation of these and other known Lon substrates revealed that human Lon is unable to degrade many bacterial Lon substrates, suggestive of a "organism-adapted" substrate selection mechanism for the natural Lon variants. However, individually replacing the N, A, and P domains of human Lon with the counterparts of bacterial Lon did not enable the human protease to degrade the same bacterial Lon substrates. This result showed that the "organism-adapted" substrate selection depends on multiple domains of the Lon proteases. Further in vitro proteolysis and mass spectrometry analysis revealed a similar substrate cleavage pattern between the bacterial and human Lon variants, which was exemplified by predominant representation of leucine, alanine, and other hydrophobic amino acids at the P(-1) site within the substrates. These observations suggest that the Lon proteases select their substrates at least in part by fine structural matching with the proteins in the same organisms.

Indexed as

Amino Acid SequenceATP-Dependent ProteasesBacterial ProteinsFrancisella tularensisHumansMitochondrial ProteinsMolecular Sequence DataProtease LaProtein DomainsSequence AlignmentSubstrate SpecificityATP-Dependent ProteasesBacterial ProteinsLONP1 protein, humanMitochondrial ProteinsProtease La

Identifiers

PMID30120231
PMCPMC6098112
OpenAlexW2887386783

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.