Evidence map›Paper›PMID 30120144›Full record

ArticleThe EMBO journal2018

SNARE-mediated membrane fusion arrests at pore expansion to regulate the volume of an organelle.

Massimo D'Agostino, Herre Jelger Risselada, Laura J Endter, Véronique Comte-Miserez, Andreas Mayer

Abstract read
In one paragraph

Article in The EMBO journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Nascent fusion pore opening monitored at single-SNAREpin resolution.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Organelle size scaling over embryonic development.Wiley interdisciplinary reviews. Developmental biology · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Effects of Long-Term Citrate Treatment in the PC3 Prostate Cancer Cell Line.International journal of molecular sciences · 2019
    Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Massimo D'AgostinoDépartement de Biochimie, Université de Lausanne, Epalinges, Switzerland.ORCID 0000-0002-4756-6330
Herre Jelger RisseladaDepartment of Theoretical Physics, Georg-August University, Göttingen, Germany.
Laura J EndterLeiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.
Véronique Comte-MiserezDépartement de Biochimie, Université de Lausanne, Epalinges, Switzerland.
Andreas MayerDépartement de Biochimie, Université de Lausanne, Epalinges, Switzerland andreas.mayer@unil.ch.ORCID 0000-0001-6131-313X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Constitutive membrane fusion within eukaryotic cells is thought to be controlled at its initial steps, membrane tethering and SNARE complex assembly, and to rapidly proceed from there to full fusion. Although theory predicts that fusion pore expansion faces a major energy barrier and might hence be a rate-limiting and regulated step, corresponding states with non-expanding pores are difficult to assay and have remained elusive. Here, we show that vacuoles in living yeast are connected by a metastable, non-expanding, nanoscopic fusion pore. This is their default state, from which full fusion is regulated. Molecular dynamics simulations suggest that SNAREs and the SM protein-containing HOPS complex stabilize this pore against re-closure. Expansion of the nanoscopic pore to full fusion can thus be triggered by osmotic pressure gradients, providing a simple mechanism to rapidly adapt organelle volume to increases in its content. Metastable, nanoscopic fusion pores are then not only a transient intermediate but can be a long-lived, physiologically relevant and regulated state of SNARE-dependent membrane fusion.

Indexed as

Membrane FusionMolecular Dynamics SimulationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSNARE ProteinsVacuolesSaccharomyces cerevisiae ProteinsSNARE Proteinsendosomeslysosomesmembrane fusionSNAREsvacuoles

Identifiers

PMID30120144
PMCPMC6166129

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.