Evidence map›Paper›PMID 30118217›Full record

ArticleJournal of the American Chemical Society2018

Biosynthesis of the Thiopeptins and Identification of an F

Hiro Ichikawa, Ghader Bashiri, Wendy L Kelly

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Cytochromes P450 involved in bacterial RiPP biosyntheses.Journal of industrial microbiology & biotechnology · 2023
    Review
  6. Article
  7. On the diversity of FProteins · 2021
    Article
  8. Article
  9. Journal of natural products · 2021
    Article
  10. Facile Stereoselective Reduction of Prochiral Ketones by using an FChembiochem : a European journal of chemical biology · 2021
    Article
  11. Article
  12. Redox Coenzyme FApplied and environmental microbiology · 2020
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Hiro IchikawaSchool of Chemistry and Biochemistry and the Parker H. Petit Institute for Bioengineering and Bioscience , Georgia Institute of Technology , Atlanta , Georgia 30332 , United States.
Ghader BashiriLaboratory of Structural Biology and Maurice Wilkins Center for Molecular Biodiscovery, School of Biological Sciences , University of Auckland , Auckland 1010 , New Zealand.ORCID 0000-0002-5092-3749
Wendy L KellySchool of Chemistry and Biochemistry and the Parker H. Petit Institute for Bioengineering and Bioscience , Georgia Institute of Technology , Atlanta , Georgia 30332 , United States.ORCID 0000-0003-4180-0832

Funding

Biosynthesis of the thiopeptide antibiotic thiostreptonR01GM090327 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI KELLY, WENDY L · 2010 to 2014
$1.5M
NIGMS NIH HHS R01 GM090327
6 · The paper itself

Abstract

Thiopeptins are highly decorated thiopeptide antibiotics similar in structure to thiostrepton A and harbor two unusual features. All thiopeptins contain a thioamide, a rare moiety among natural products, and a subset of thiopeptins present with a piperidine in the core macrocycle rather than the more oxidated dehydropiperidine or pyridine rings typically observed in the thiopeptides. Here, we report the identification of the thiopeptin biosynthetic gene ( tpn) cluster in Streptomyces tateyamensis and the gene product, TpnL, which shows sequence similarity to (deaza)flavin-dependent oxidoreductases. Heterologous expression of TpnL in the thiostrepton A producer Streptomyces laurentii led to the production of a piperidine-containing analogue. Binding studies revealed that TpnL preferentially binds the deazaflavin cofactor coenzyme F

Indexed as

Amino Acid SequenceAnti-Bacterial AgentsAntimicrobial Cationic PeptidesBacterial ProteinsMultigene FamilyOxidation-ReductionOxidoreductasesPeptidesProtein BindingRiboflavinStreptomycesAnti-Bacterial AgentsAntimicrobial Cationic PeptidesBacterial Proteinscoenzyme F420OxidoreductasesPeptidesRiboflavinthiopeptin

Identifiers

PMID30118217
PMCPMC6193465

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.