Evidence map›Paper›PMID 30117290›Full record

ArticleMicrobial biotechnology2018

Desulfitobacterium contributes to the microbial transformation of 2,4,5-T by methanogenic enrichment cultures from a Vietnamese active landfill.

Ute Lechner, Dominique Türkowsky, Thi Thu Hang Dinh, Hassan Al-Fathi, Stefan Schwoch, Stefan Franke, Michelle-Sophie Gerlach, Mandy Koch, Martin von Bergen, Nico Jehmlich and 1 more

Open access · goldAbstract read
In one paragraph

Article in Microbial biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Ute LechnerInstitute of Biology/Microbiology, Martin-Luther University Halle-Wittenberg, Halle, Germany.ORCID 0000-0001-7857-837X
Dominique TürkowskyDepartment of Molecular Systems Biology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany.
Thi Thu Hang DinhVietnamese Academy of Science and Technology, Institute of Biotechnology, Hanoi, Vietnam.
Hassan Al-FathiInstitute of Biology/Microbiology, Martin-Luther University Halle-Wittenberg, Halle, Germany.
Stefan SchwochInstitute of Biology/Microbiology, Martin-Luther University Halle-Wittenberg, Halle, Germany.
Stefan FrankeInstitute of Biology/Microbiology, Martin-Luther University Halle-Wittenberg, Halle, Germany.
Michelle-Sophie GerlachInstitute of Biology/Microbiology, Martin-Luther University Halle-Wittenberg, Halle, Germany.
Mandy KochInstitute of Chemistry/Food and Environmental Chemistry, Martin-Luther University Halle-Wittenberg, Halle, Germany.
Martin von BergenDepartment of Molecular Systems Biology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany.
Nico JehmlichDepartment of Molecular Systems Biology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany.
Thi Cam Ha DangVietnamese Academy of Science and Technology, Institute of Biotechnology, Hanoi, Vietnam.
Martin Luther University Halle-Wittenberg · DEHelmholtz Centre for Environmental Research · DEVietnam Academy of Science and Technology · VN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The herbicide 2,4,5-trichlorophenoxyacetic acid (2,4,5-T) was a major component of Agent Orange, which was used as a defoliant in the Vietnam War. Little is known about its degradation under anoxic conditions. Established enrichment cultures using soil from an Agent Orange bioremediation plant in southern Vietnam with pyruvate as potential electron donor and carbon source were shown to degrade 2,4,5-T via ether cleavage to 2,4,5-trichlorophenol (2,4,5-TCP), which was further dechlorinated to 3,4-dichlorophenol. Pyruvate was initially fermented to hydrogen, acetate and propionate. Hydrogen was then used as the direct electron donor for ether cleavage of 2,4,5-T and subsequent dechlorination of 2,4,5-TCP. 16S rRNA gene amplicon sequencing indicated the presence of bacteria and archaea mainly belonging to the Firmicutes, Bacteroidetes, Spirochaetes, Chloroflexi and Euryarchaeota. Desulfitobacterium hafniense was identified as the dechlorinating bacterium. Metaproteomics of the enrichment culture indicated higher protein abundances of 60 protein groups in the presence of 2,4,5-T. A reductive dehalogenase related to RdhA3 of D. hafniense showed the highest fold change, supporting its function in reductive dehalogenation of 2,4,5-TCP. Despite an ether-cleaving enzyme not being detected, the inhibition of ether cleavage but not of dechlorination, by 2-bromoethane sulphonate, suggested that the two reactions are catalysed by different organisms.

Indexed as

2,4,5-Trichlorophenoxyacetic AcidBacterial ProteinsBiodegradation, EnvironmentalCulture MediaDesulfitobacteriumHalogenationHerbicidesMethaneSoil MicrobiologyVietnam2,4,5-Trichlorophenoxyacetic AcidBacterial ProteinsCulture MediaHerbicidesMethane

Identifiers

PMID30117290
PMCPMC6196390
OpenAlexW2887820959

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.