Evidence map›Paper›PMID 30117038›Full record

ArticleJournal of biomolecular NMR2018

Conformationally locked lanthanide chelating tags for convenient pseudocontact shift protein nuclear magnetic resonance spectroscopy.

Daniel Joss, Roché M Walliser, Kaspar Zimmermann, Daniel Häussinger

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of biomolecular NMR, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
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  3. Article
  4. Localising individual atoms of tryptophan side chains in the metallo-Magnetic resonance (Gottingen, Germany) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Daniel JossDepartment of Chemistry, University of Basel, St. Johanns-Ring 19, 4056, Basel, Switzerland.ORCID http://orcid.org/0000-0002-9101-4525
Roché M WalliserDepartment of Chemistry, University of Basel, St. Johanns-Ring 19, 4056, Basel, Switzerland.
Kaspar ZimmermannDepartment of Chemistry, University of Basel, St. Johanns-Ring 19, 4056, Basel, Switzerland.
Daniel HäussingerDepartment of Chemistry, University of Basel, St. Johanns-Ring 19, 4056, Basel, Switzerland. daniel.haeussinger@unibas.ch.ORCID http://orcid.org/0000-0002-4798-0072
University of Basel · CH

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 200021_130263
6 · The paper itself

Abstract

Pseudocontact shifts (PCS) generated by lanthanide chelating tags yield valuable restraints for investigating protein structures, dynamics and interactions in solution. In this work, dysprosium-, thulium- and terbium-complexes of eight-fold methylated 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid tags [DOTA-M8-(4R4S)-SSPy] are presented that induce large pseudocontact shifts up to 5.5 ppm and adopt exclusively the square antiprismatic conformation. This is in contrast to our earlier findings on complexes of the stereoisomeric DOTA-M8-(8S)-SSPy, where significant amounts of the twisted square antiprismatic conformer for the Dy tag were observed. The Dy-, Tm-, Tb- and Lu-complexes of DOTA-M8-(4R4S)-SSPy were conjugated to ubiquitin S57C and selectively

Indexed as

Carbonic Anhydrase IIChelating AgentsHeterocyclic Compounds, 1-RingHumansLanthanoid Series ElementsModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein ConformationStaining and LabelingUbiquitinWater1,4,7,10-tetraazacyclododecane- 1,4,7,10-tetraacetic acidCarbonic Anhydrase IIChelating AgentsHeterocyclic Compounds, 1-RingLanthanoid Series ElementsUbiquitinWaterDensity functional theoryLanthanide chelating tagNuclear magnetic resonanceParamagneticProteinPseudocontact shift

Identifiers

PMID30117038
OpenAlexW2886436941

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.