Evidence map›Paper›PMID 30115642›Full record

ArticleBlood advances2018

Computational modeling and confirmation of leukemia-associated minor histocompatibility antigens.

Jefferson L Lansford, Udara Dharmasiri, Shengjie Chai, Sally A Hunsucker, Dante S Bortone, James E Keating, Ian M Schlup, Gary L Glish, Edward J Collins, Gheath Alatrash and 3 more

Open access · goldAbstract read
In one paragraph

Article in Blood advances, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. HLA Haplotypes and Relapse After Hematopoietic Cell Transplantation.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2024
    Article
  5. CD3 downregulation identifies high-avidity human CD8 T cells.Clinical and experimental immunology · 2024
    Article
  6. Article
  7. Review
  8. Article
  9. Article
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  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Immune escape and immunotherapy of acute myeloid leukemia.The Journal of clinical investigation · 2020
    Review
  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Jefferson L LansfordSchool of Medicine.
Udara DharmasiriLineberger Comprehensive Cancer Center.
Shengjie ChaiCurriculum in Bioinformatics and Computational Biology.
Sally A HunsuckerLineberger Comprehensive Cancer Center.
Dante S BortoneLineberger Comprehensive Cancer Center.
James E KeatingDepartment of Chemistry, and.
Ian M SchlupDepartment of Chemistry, and.
Gary L GlishDepartment of Chemistry, and.
Edward J CollinsDepartment of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC.
Gheath AlatrashDepartment of Stem Cell Transplantation & Cellular Therapy, The University of Texas MD Anderson Cancer Center, Houston, TX; and.
Jeffrey J MolldremDepartment of Stem Cell Transplantation & Cellular Therapy, The University of Texas MD Anderson Cancer Center, Houston, TX; and.
Paul M ArmisteadLineberger Comprehensive Cancer Center.
Benjamin G VincentLineberger Comprehensive Cancer Center.
Segeberger Kliniken · DEThe University of Texas MD Anderson Cancer Center · USUNC Lineberger Comprehensive Cancer CenterUniversity of North Carolina at Chapel Hill · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
UNC Predoc Training Progr in Bioinformatics/Comp BiologyT32GM067553 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ELSTON, TIMOTHY C · 2005 to 2019
$2.5M
Leukemia Specific Splice Isoforms as Neo-Antigens for T-Cell ImmunotherapyR01CA201225 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ARMISTEAD, PAUL MICHAEL · 2016 to 2020
$2.3M
NCI NIH HHS P30 CA016086NCI NIH HHS R01 CA201225NIGMS NIH HHS T32 GM067553
6 · The paper itself

Abstract

T-cell responses to minor histocompatibility antigens (mHAs) mediate both antitumor immunity (graft-versus-leukemia [GVL]) and graft-versus-host disease (GVHD) in allogeneic stem cell transplant. Identifying mHAs with high allele frequency, tight binding affinity to common HLA molecules, and narrow tissue restriction could enhance immunotherapy against leukemia. Genotyping and HLA allele data from 101 HLA-matched donor-recipient pairs (DRPs) were computationally analyzed to predict both class I and class II mHAs likely to induce either GVL or GVHD. Roughly twice as many mHAs were predicted in HLA-matched unrelated donor (MUD) stem cell transplantation (SCT) compared with HLA-matched related transplants, an expected result given greater genetic disparity in MUD SCT. Computational analysis predicted 14 of 18 previously identified mHAs, with 2 minor antigen mismatches not being contained in the patient cohort, 1 missed mHA resulting from a noncanonical translation of the peptide antigen, and 1 case of poor binding prediction. A predicted peptide epitope derived from GRK4, a protein expressed in acute myeloid leukemia and testis, was confirmed by targeted differential ion mobility spectrometry-tandem mass spectrometry. T cells specific to UNC-GRK4-V were identified by tetramer analysis both in DRPs where a minor antigen mismatch was predicted and in DRPs where the donor contained the allele encoding UNC-GRK4-V, suggesting that this antigen could be both an mHA and a cancer-testis antigen. Computational analysis of genomic and transcriptomic data can reliably predict leukemia-associated mHA and can be used to guide targeted mHA discovery.

Indexed as

Computer SimulationHematopoietic Stem Cell TransplantationLeukemia, Myelogenous, Chronic, BCR-ABL PositiveLeukemia, Myeloid, AcuteModels, ImmunologicalMyelodysplastic SyndromesAllograftsFemaleGraft vs Host DiseaseGraft vs Leukemia EffectHumansMaleMinor Histocompatibility AntigensUnrelated DonorsMinor Histocompatibility Antigens

Identifiers

PMID30115642
PMCPMC6113610
OpenAlexW2885426694

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.