ArticleJournal of experimental botany2018
Transcriptomic comparison reveals genetic variation potentially underlying seed developmental evolution of soybeans.
Article in Journal of experimental botany, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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25 citing papers in PubMed, 62 citations in OpenAlex.
- Integrative Transcriptomic Analysis and Co-Expression Network Characterization of Soybean Developmental Tissues.Plants (Basel, Switzerland) · 2026Article
- A 14-3-3 modulator of seed weight and quality for unlocking the yield potential of soybean.Nature communications · 2025Article
- Integrated Transcriptomic and Proteomic Characterization of a Chromosome Segment Substitution Line Reveals the Regulatory Mechanism Controlling the Seed Weight in Soybean.Plants (Basel, Switzerland) · 2024Article
- RNA-Seq Analysis Reveals the Molecular Mechanisms Regulating the Development of Different Adipose Tissues in Broiler Chicks.Animals : an open access journal from MDPI · 2024Article
- Investigating Variability in Viral Presence and Abundance across Soybean Seed Development Stages Using Transcriptome Analysis.Plants (Basel, Switzerland) · 2023Article
- The elite variations in germplasms for soybean breeding.Molecular breeding : new strategies in plant improvement · 2023Article
- Molecular, genetic, and genomic basis of seed size and yield characteristics in soybean.Frontiers in plant science · 2023Review
- Identification of Age-associated Proteins and Functional Alterations in Human Retinal Pigment Epithelium.Genomics, proteomics & bioinformatics · 2022Article
- Genome-wide identification and analysis ofFrontiers in genetics · 2022Article
- Comparing Early Transcriptomic Responses of 18 Soybean (International journal of molecular sciences · 2021Article
- Transcriptome and Resequencing Analyses Provide Insight into Differences in Organic Acid Accumulation in Two Pear Varieties.International journal of molecular sciences · 2021Article
- Comparative transcriptome analysis reveals regulatory network and regulators associated with proanthocyanidin accumulation in persimmon.BMC plant biology · 2021Article
- Phenotypic Characteristics and Transcriptome of Cucumber Male Flower Development Under Heat Stress.Frontiers in plant science · 2021Article
- Integrative Morphological, Physiological, Proteomics Analyses of Jujube Fruit Development Provide Insights Into Fruit Quality Domestication From Wild Jujube to Cultivated Jujube.Frontiers in plant science · 2021Article
- Comprehensive Transcriptome Analyses Reveal Candidate Genes for Variation in Seed Size/Weight During Peanut (Frontiers in plant science · 2021Article
- Article
- Comparative transcriptome analysis reveals evolutionary divergence and shared network of cold and salt stress response in diploid D-genome cotton.BMC plant biology · 2020Article
- Transcriptome analysis reveals mechanism of early ripening in Kyoho grape with hydrogen peroxide treatment.BMC genomics · 2020Article
- Responses of Soybean Genes in the Substituted Segments of Segment Substitution Lines Following aFrontiers in plant science · 2020Article
- RNA-Seq Analysis Reveals Hub Genes Involved in Chicken Intramuscular Fat and Abdominal Fat Deposition During Development.Frontiers in genetics · 2020Article
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Soybean (Glycine max) was domesticated from its wild relative Glycine soja. However, the genetic variations underlying soybean domestication are not well known. Comparative transcriptomics revealed that a small portion of the orthologous genes might have been fast evolving. In contrast, three gene expression clusters were identified as divergent by their expression patterns, which occupied 37.44% of the total genes, hinting at an essential role for gene expression alteration in soybean domestication. Moreover, the most divergent stage in gene expression between wild and cultivated soybeans occurred during seed development around the cotyledon stage (15 d after fertilization, G15). A module in which the co-expressed genes were significantly down-regulated at G15 of wild soybeans was identified. The divergent clusters and modules included substantial differentially expressed genes (DEGs) between wild and cultivated soybeans related to cell division, storage compound accumulation, hormone response, and seed maturation processes. Chromosomal-linked DEGs, quantitative trait loci controlling seed weight and oil content, and selection sweeps revealed candidate DEGs at G15 in the fruit-related divergence of G. max and G. soja. Our work establishes a transcriptomic selection mechanism for altering gene expression during soybean domestication, thus shedding light on the molecular networks underlying soybean seed development and breeding strategy.
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