Evidence map›Paper›PMID 30111894›Full record

ArticleNature immunology2018

PLD3 and PLD4 are single-stranded acid exonucleases that regulate endosomal nucleic-acid sensing.

Amanda L Gavin, Deli Huang, Christoph Huber, Annica Mårtensson, Virginie Tardif, Patrick D Skog, Tanya R Blane, Therese C Thinnes, Kent Osborn, Hayley S Chong and 17 more

Abstract read
In one paragraph

Article in Nature immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed
8.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 145 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Physiological and Metabolic Effects ofAnimals : an open access journal from MDPI · 2026
    Article
  5. Cell-Free DNA-Based Theranostics for Inflammatory Disorders.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
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  7. Article
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  18. Review
  19. Article
  20. Article

35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 6 institutions in 3 countries.

Amanda L GavinThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-9921-4225
Deli HuangThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
Christoph HuberThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
Annica MårtenssonThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
Virginie TardifThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-5604-6524
Patrick D SkogThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
Tanya R BlaneThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
Therese C ThinnesThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
Kent OsbornThe University of California, San Diego, La Jolla, CA, USA.
Hayley S ChongThe University of California, San Diego, La Jolla, CA, USA.
Farnaz KargaranThe University of California, San Diego, La Jolla, CA, USA.
Phoebe KimmThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
Armen ZeitjianThe University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-2383-9373
Rachel L SielskiThe University of California, San Diego, La Jolla, CA, USA.
Megan BriggsThe University of California, San Diego, La Jolla, CA, USA.
Sebastian R SchulzDivision of Molecular Immunology, University of Erlangen-Nürnberg, Erlangen, Germany.
Alessandro ZarpellonThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
Benjamin CravattThe Department of Chemical Biology, The Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-5330-3492
Ee Shan PangBiomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia.
John TeijaroThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
Juan Carlos de la TorreThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
Meredith O'KeeffeBiomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia.ORCID http://orcid.org/0000-0002-0779-4654
Hubertus HochreinBavarian Nordic, Martinsried, Germany.
Markus DammeBiochemisches Institut, Christian-Albrechts-Universität, Kiel, Germany.
Luc TeytonThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
Brian R LawsonThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.
David NemazeeThe Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA. nemazee@scripps.edu.ORCID http://orcid.org/0000-0002-4769-6311
Scripps Research Institute · USUniversity of California San Diego · USAustralian Regenerative Medicine Institute · AUBavarian Nordic (Germany) · DEChristian-Albrechts-Universität zu Kiel · DEFriedrich-Alexander-Universität Erlangen-Nürnberg · DE

Funding

Immune Tolerance in Non-Clonal Immune SystemsR01AI059714 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 2004 to 2013
$3.9M
Immune Tolerance in Non-Clonal Immune SystemsR37AI059714 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 2014 to 2020
$3.5M
Functions of novel phospholipase D proteins in nucleic acid sensingR01AI142945 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 2019 to 2023
$2.4M
Novel Strategies for Controlling Persistent Viral InfectionR01AI123210 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI TEIJARO, JOHN ROSS · 2016 to 2019
$1.9M
Role of Pld4 in nucleic acid sensing and interferon productionR21AI126011 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 2016 to 2017
$529k
Functional analysis of Phospholipase D4R21AI082493 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 2009 to 2010
$520k
Analysis of the immunological role of Phospholipase D4R21AI101692 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 2012 to 2013
$513k
NIAID NIH HHS R01 AI059714NIAID NIH HHS R01 AI123210NIAID NIH HHS R01 AI142945NIAID NIH HHS R21 AI082493NIAID NIH HHS R21 AI101692NIAID NIH HHS R21 AI126011NIAID NIH HHS R37 AI059714
6 · The paper itself

Abstract

The sensing of microbial genetic material by leukocytes often elicits beneficial pro-inflammatory cytokines, but dysregulated responses can cause severe pathogenesis. Genome-wide association studies have linked the gene encoding phospholipase D3 (PLD3) to Alzheimer's disease and have linked PLD4 to rheumatoid arthritis and systemic sclerosis. PLD3 and PLD4 are endolysosomal proteins whose functions are obscure. Here, PLD4-deficient mice were found to have an inflammatory disease, marked by elevated levels of interferon-γ (IFN-γ) and splenomegaly. These phenotypes were traced to altered responsiveness of PLD4-deficient dendritic cells to ligands of the single-stranded DNA sensor TLR9. Macrophages from PLD3-deficient mice also had exaggerated TLR9 responses. Although PLD4 and PLD3 were presumed to be phospholipases, we found that they are 5' exonucleases, probably identical to spleen phosphodiesterase, that break down TLR9 ligands. Mice deficient in both PLD3 and PLD4 developed lethal liver inflammation in early life, which indicates that both enzymes are needed to regulate inflammatory cytokine responses via the degradation of nucleic acids.

Indexed as

Alzheimer DiseaseAnimalsArthritis, RheumatoidDendritic CellsDNA, Single-StrandedEndosomesExodeoxyribonucleasesExonucleasesGenome-Wide Association StudyHepatitisHumansInterferon-gammaMacrophagesMembrane GlycoproteinsMiceMice, Inbred C57BLDNA, Single-StrandedExodeoxyribonucleasesExonucleasesInterferon-gammaMembrane GlycoproteinsPhospholipase DPld3 protein, mousePLD4 protein, mouseToll-Like Receptor 9

Identifiers

PMID30111894
PMCPMC6105523
OpenAlexW2886575447

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.