Evidence map›Paper›PMID 30111773›Full record

ArticleScientific reports2018

Genetic relatedness of Staphylococcus aureus isolates obtained from cystic fibrosis patients at a tertiary academic hospital in Pretoria, South Africa.

T Goolam Mahomed, M M Kock, R Masekela, E Hoosien, M M Ehlers

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Methicillin-ResistantAntibiotics (Basel, Switzerland) · 2023
    Article
  3. Article
  4. Review
  5. Human-Associated Methicillin-ResistantAntibiotics (Basel, Switzerland) · 2021
    Article
  6. Molecular characterisation of methicillin-resistantEpidemiology and infection · 2020
    Article
  7. Prevalence and Detection ofThe Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

T Goolam MahomedDepartment of Medical Microbiology, Faculty of Health Sciences, Prinshof Campus, University of Pretoria, Pretoria, 0001, South Africa.
M M KockDepartment of Medical Microbiology, Faculty of Health Sciences, Prinshof Campus, University of Pretoria, Pretoria, 0001, South Africa.
R MasekelaDepartment of Maternal and Child Health, School of Clinical Medicine, University of KwaZulu-Natal, Durban, 4041, South Africa.
E HoosienAmpath Laboratory, Highveld Office Park, Centurion, 0157, South Africa.
M M EhlersDepartment of Medical Microbiology, Faculty of Health Sciences, Prinshof Campus, University of Pretoria, Pretoria, 0001, South Africa. marthie.ehlers@up.ac.za.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cystic fibrosis (CF) is an inherited recessive disease that affects mucocillary clearance in the lung, allowing it to be colonised with bacteria such as Staphylococcus aureus. To survive in the CF lung S. aureus adapts both phenotypically and genotypically, through various mechanisms. In this study, multiple specimens were collected from the participants and were processed routinely and were additionally cultured in chromogenic media. Multiplex PCR assays were employed to detect methicillin resistance and selected virulence and quaternary ammonium compound (qac) genes. Genetic relatedness of the S. aureus was determined using agr, SCCmec and spa typing as well as pulsed field gel electrophoresis (PFGE) and multi-locus sequence typing (MLST). Thirty-three S. aureus isolates were isolated, of which 51% (17/33) were methicillin resistant S. aureus (MRSA). The virulence and qac genes were more prevalent in MRSA than the methicillin sensitive S. aureus (MSSA) isolates. The PFGE analysis showed nine distinct pulsotypes while MLST showed eight sequence types. All the STs detected in this study, except for ST508 have been previously isolated from CF patients according to the literature. This study showed a genetically diverse S. aureus population with a high prevalence of virulence genes among the MRSA isolates from the CF clinic.

Indexed as

AdolescentAdultBacterial ToxinsChildChild, PreschoolCystic FibrosisElectrophoresis, Gel, Pulsed-FieldExotoxinsFemaleGenotypeHumansInfantMaleMethicillin ResistanceMethicillin-Resistant Staphylococcus aureusMicrobial Sensitivity TestsBacterial ToxinsExotoxinsVirulence Factors

Identifiers

PMID30111773
PMCPMC6093922

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.