Evidence map›Paper›PMID 30111362›Full record

ArticleOrphanet journal of rare diseases2018

Missense mutation in SLIT2 associated with congenital myopia, anisometropia, connective tissue abnormalities, and obesity.

Katherine Y Liu, Jesse D Sengillo, Gabriel Velez, Ruben Jauregui, Lynn Y Sakai, Irene H Maumenee, Alexander G Bassuk, Vinit B Mahajan, Stephen H Tsang

Open access · goldAbstract readCase Reports
In one paragraph

Article in Orphanet journal of rare diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Katherine Y LiuStony Brook University School of Medicine, Stony Brook, NY, USA.
Jesse D SengilloDepartment of Ophthalmology, Columbia University, New York, NY, USA.
Gabriel VelezOmics Laboratory, Stanford University, Palo Alto, CA, USA.
Ruben JaureguiDepartment of Ophthalmology, Columbia University, New York, NY, USA.
Lynn Y SakaiDepartments of Molecular and Medical Genetics and Biochemistry and Molecular Biology, Oregon Health and Science University and Shriners Hospital for Children, Portland, USA.
Irene H MaumeneeDepartment of Ophthalmology, Columbia University, New York, NY, USA.
Alexander G BassukDepartment of Pediatrics, University of Iowa, Iowa City, IA, USA.
Vinit B MahajanOmics Laboratory, Stanford University, Palo Alto, CA, USA.
Stephen H TsangJonas Children's Vision Care, and Bernard and Shirlee Brown Glaucoma Laboratory, New York, USA. gene.editing@gmail.com.
Columbia University · USUniversity of Iowa · USOregon Health & Science University · USReading Hospital · USStanford University · USStony Brook University · US

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Parisa Tehranifar · 1985 to 2026
$115.3M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007337 · NIGMS · UNIVERSITY OF IOWA · PI GEYER, PAMELA K., LENTZ, STEVEN R · 1985 to 2020
$15.9M
Instrumentation, Fabrication, and Design CoreP30EY019007 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Xin Zhang · 2010 to 2026
$12.9M
Therapeutic approaches for ABCA4-associated disordersR24EY019861 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ALLIKMETS, RANDO L · 2011 to 2015
$7.2M
Toward mechanism- and gene-based therapies for retinal degenerationR01EY018213 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Stephen H Tsang · 2008 to 2026
$6.6M
Gene Silencing and Gene Editing in PhototransductionR01EY024698 · NEI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Stephen H Tsang · 2015 to 2026
$4.7M
Structure and Function of Calpain-5R01EY024665 · NEI · UNIVERSITY OF IOWA · PI MAHAJAN, VINIT B · 2015 to 2019
$1.9M
Mechanistic Studies on Regenerative Medicine Approaches to Childhood BlindnessR01EY026682 · NEI · UNIVERSITY OF IOWA · PI BASSUK, ALEXANDER G, MAHAJAN, VINIT B · 2016 to 2019
$1.6M
Mechanism-based therapies for photoreceptor degenerationR01EY025225 · NEI · UNIVERSITY OF IOWA · PI MAHAJAN, VINIT B · 2015 to 2018
$1.3M
Evaluating GWAS AMD Candidate Loci by Gene Editing in Human iPS CellsR21AG050437 · NIA · UNIVERSITY OF IOWA · PI BASSUK, ALEXANDER G, MAHAJAN, VINIT B · 2015 to 2016
$431k
Doris Duke Charitable Foundation 2013103NCI NIH HHS 5P30CA013696NCI NIH HHS P30 CA013696NEI NIH HHS P30 EY019007NEI NIH HHS P30EY019007, R01EY018213, R01EY024698, R01EY026682, R21AG050437, R24EY019861NEI NIH HHS R01 EY018213NEI NIH HHS R01 EY024665NEI NIH HHS R01 EY024698NEI NIH HHS R01 EY025225NEI NIH HHS R01 EY026682NEI NIH HHS R01EY026682, R01EY024665, R01EY025225, R01EY024698 and R21AG050437NEI NIH HHS R24 EY019861NIA NIH HHS R21 AG050437NIGMS NIH HHS T32 GM007337NIH HHS T32GM007337 and F30EYE027986
6 · The paper itself

Abstract

backgroundSLIT2 is a protein ligand for the Roundabout (ROBO) receptor and was found to play a major role in repulsive midline axon guidance in central nervous system development. Based on studies utilizing knockout models, it has been postulated that SLIT2 is important for preventing inappropriate axonal routing during mammalian optic chiasm development.

methodsCase report.

resultsHere, we report a case of congenital myopia, anisometropia, and obesity in a patient with a SLIT2 point mutation. Examination of the patient's skin biopsy revealed abnormalities in elastin and collagen fibrils that suggest an underlying connective tissue disorder. Structural modeling placed the novel mutation (p.D1407G) in the EGF-like domain 8 and was predicted to affect interactions with SLIT2 binding partners.

conclusionsTo the authors' knowledge, this is the first report of a SLIT2 variant in the context of these ocular findings.

Indexed as

AdolescentAnisometropiaConnective Tissue DiseasesHumansIntercellular Signaling Peptides and ProteinsMaleMutation, MissenseNerve Tissue ProteinsObesitySlit Homolog 2 ProteinIntercellular Signaling Peptides and ProteinsNerve Tissue ProteinsSlit Homolog 2 ProteinAnisometropiaMyopiaObesityPrecision medicineSLIT2Structural modeling

Identifiers

PMID30111362
PMCPMC6094464
OpenAlexW2885527433

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.