Evidence map›Paper›PMID 30111278›Full record

ArticleBMC plant biology2018

New tools to screen wild peanut species for aflatoxin accumulation and genetic fingerprinting.

Renee S Arias, Victor S Sobolev, Alicia N Massa, Valerie A Orner, Travis E Walk, Linda L Ballard, Sheron A Simpson, Naveen Puppala, Brian E Scheffler, Francisco de Blas and 1 more

Abstract read
In one paragraph

Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Breeding Crops for Enhanced Food Safety.Frontiers in plant science · 2020
    Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Renee S AriasUSDA-ARS-NPRL, National Peanut Research Laboratory (NPRL), 1011 Forrester Dr. S.E, Dawson, GA, 39842, USA. renee.arias@ars.usda.gov.
Victor S SobolevUSDA-ARS-NPRL, National Peanut Research Laboratory (NPRL), 1011 Forrester Dr. S.E, Dawson, GA, 39842, USA.
Alicia N MassaUSDA-ARS-NPRL, National Peanut Research Laboratory (NPRL), 1011 Forrester Dr. S.E, Dawson, GA, 39842, USA.
Valerie A OrnerUSDA-ARS-NPRL, National Peanut Research Laboratory (NPRL), 1011 Forrester Dr. S.E, Dawson, GA, 39842, USA.
Travis E WalkUSDA-ARS-NPRL, National Peanut Research Laboratory (NPRL), 1011 Forrester Dr. S.E, Dawson, GA, 39842, USA.
Linda L BallardUSDA-ARS-GBRU, Genomics and Bioinformatics Research Unit, 141 Experiment Station rd, Stoneville, MS, 38776, USA.
Sheron A SimpsonUSDA-ARS-GBRU, Genomics and Bioinformatics Research Unit, 141 Experiment Station rd, Stoneville, MS, 38776, USA.
Naveen PuppalaNew Mexico State University, Agricultural Science Center at Clovis, 2346 SR 288, Clovis, NM, 88101, USA.
Brian E SchefflerUSDA-ARS-GBRU, Genomics and Bioinformatics Research Unit, 141 Experiment Station rd, Stoneville, MS, 38776, USA.
Francisco de BlasFacultad de Ciencias Exactas y Naturales y Agrimensura, Universidad Nacional del Nordeste, Av. Libertad 5470, C.P, 3400, Corrientes, Argentina.
Guillermo J SeijoFacultad de Ciencias Exactas y Naturales y Agrimensura, Universidad Nacional del Nordeste, Av. Libertad 5470, C.P, 3400, Corrientes, Argentina.

Funding

USDA-ARS NP301 6604-21000-004-00DUSDA-ARS NP303 6604-42000-008-00D
6 · The paper itself

Abstract

backgroundAflatoxin contamination in peanut seeds is still a serious problem for the industry and human health. No stable aflatoxin resistant cultivars have yet been produced, and given the narrow genetic background of cultivated peanuts, wild species became an important source of genetic diversity. Wild peanut seeds, however, are not abundant, thus, an effective method of screening for aflatoxin accumulation using minimal seeds is highly desirable. In addition, keeping record of genetic fingerprinting of each accession would be very useful for breeding programs and for the identification of accessions within germplasm collections.

resultsIn this study, we report a method of screening for aflatoxin accumulation that is applicable to the small-size seeds of wild peanuts, increases the reliability by testing seed viability, and records the genetic fingerprinting of the samples. Aflatoxin levels observed among 20 wild peanut species varied from zero to 19000 ng.g

conclusionsThis study provides a reliable method to screen wild species of peanut for aflatoxin resistance using minimal seeds. In addition we report 288 new SSRs for peanut, and a cost-effective combination of markers sufficient to discriminate all 20 species tested. These tools can be used for the systematic search of aflatoxin resistant germplasm keeping record of the genetic fingerprinting of the accessions tested for breeding purpose.

Indexed as

Genetic MarkersMicrosatellite RepeatsAflatoxinsArachisAspergillus flavusDNA FingerprintingReproducibility of ResultsSeed BankSeedsAflatoxinsGenetic MarkersaflatoxinArachisAspergillus flavusFingerprintinggroundnutmolecular markerspeanut

Identifiers

PMID30111278
PMCPMC6094572

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.