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ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2018

A 55 K SNP array-based genetic map and its utilization in QTL mapping for productive tiller number in common wheat.

Jiajun Liu, Wei Luo, Nana Qin, Puyang Ding, Han Zhang, Congcong Yang, Yang Mu, Huaping Tang, Yaxi Liu, Wei Li and 7 more

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

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63citing papers in PubMed
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3 · Its place in the literature

Who cites it

63 citing papers in PubMed.

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  8. Identification, characterization, and associations with agronomic traits and early vigor of mature wheat embryo size loci.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
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  10. Joint linkage and association analysis identifies genomic regions and candidate genes for yield-related traits in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
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  11. Identification and validation of a novel tiller inhibition locus (Molecular breeding : new strategies in plant improvement · 2025
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  12. Identification of genetic loci and candidate genes underlying Fusarium crown rot resistance in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
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  20. Quantitative trait loci detection for three tiller-related traits and the effects on wheat (Triticum aestivum L.) yields.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
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3 more citing papers are in PubMed but not listed here.

4 · The record

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5 · Who and what money

Authors and funding

17 authors.

Jiajun LiuTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Wei LuoTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Nana QinTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Puyang DingTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Han ZhangTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Congcong YangTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Yang MuTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Huaping TangTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Yaxi LiuTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Wei LiCollege of Agronomy, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, China.
Qiantao JiangTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Guoyue ChenTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Yuming WeiTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Youliang ZhengTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China.
Chunji LiuCommonwealth Scientific and Industrial Research Organization Agriculture and Food, St Lucia, QLD, 4067, Australia.
Xiujin LanTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China. lanxiujin@163.com.
Jian MaTriticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130, Sichuan, China. jianma@sicau.edu.cn.ORCID http://orcid.org/0000-0001-6265-7911

Funding

The Applied Basic Research Programs of Science and Technology Department of Sichuan Province 2016JY0010The International Science and Technology Cooperation and Exchanges Program of Science and Technology Department of Sichuan Province 2017HH0076the National Natural Science Foundation of China 31601292The National Natural Science Foundation of China 31570335
6 · The paper itself

Abstract

key messageA high-density genetic map constructed with a wheat 55 K SNP array was highly consistent with the physical map of this species and it facilitated the identification of a novel major QTL for productive tiller number. Productive tiller number (PTN) plays a key role in wheat grain yield. In this study, a recombinant inbred line population with 199 lines derived from a cross between '20828' and 'Chuannong16' was used to construct a high-density genetic map using wheat 55 K single nucleotide polymorphism (SNP) array. The constructed genetic map contains 12,109 SNP markers spanning 3021.04 cM across the 21 wheat chromosomes. The orders of the genetic and physical positions of these markers are generally in agreement, and they also match well with those based on the 660 K SNP array from which the one used in this study was derived. The ratios of SNPs located in each of the wheat deletion bins were similar among the wheat 9 K, 55 K, 90 K, 660 K and 820 K SNP arrays. Based on the constructed maps, a novel major quantitative trait locus QPtn.sau-4B for PTN was detected across multi-environments in a 0.55 cM interval on 4B and it explained 17.23-45.46% of the phenotypic variance. Twenty common genes in the physical interval between the flanking markers were identified on chromosome 4B of 'Chinese Spring' and wild emmer. These results indicate that wheat 55 K SNP array could be an ideal tool in primary mapping of target genes and the identification of QPtn.sau-4B laid a foundation for the following fine mapping and cloning work.

Indexed as

Chromosome MappingPolymorphism, Single NucleotideQuantitative Trait LociChromosomes, PlantEdible GrainGenetic MarkersGenotypePhenotypeTriticumGenetic Markers

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.