Evidence map›Paper›PMID 30109028›Full record

ArticleF1000Research2018

PDZD8 is not the 'functional ortholog' of Mmm1, it is a paralog.

Jeremy G Wideman, Dario L Balacco, Tim Fieblinger, Thomas A Richards

Open access · goldAbstract read
In one paragraph

Article in F1000Research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Maintaining social contacts: The physiological relevance of organelle interactions.Biochimica et biophysica acta. Molecular cell research · 2020
    Review
  10. Review
  11. Review
  12. PDZD8 mediates a Rab7-dependent interaction of the ER with late endosomes and lysosomes.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Review
  14. Review
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Jeremy G WidemanDepartment of Biosciences, University of Exeter, Exeter, EX4 4QD, UK.ORCID 0000-0002-4426-9533
Dario L BalaccoSchool of Life Sciences, University of Nottingham, Nottingham, NG7 2UH, UK.ORCID 0000-0002-7648-1213
Tim FieblingerWissenschaftskolleg zu Berlin, Berlin, 14193, Germany.
Thomas A RichardsDepartment of Biosciences, University of Exeter, Exeter, EX4 4QD, UK.
University of Exeter · GBLund University · SEUniversity of Nottingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Authors of a recent paper demonstrate that, like ERMES (ER-mitochondria encounter structure) in fungal cells, PDZD8 (PDZ domain containing 8) tethers mitochondria to the ER in mammalian cells. However, identifying PDZD8 as a "functional ortholog" of yeast Mmm1 (maintenance of mitochondrial morphology protein 1) is at odds with the phylogenetic data. PDZD8 and Mmm1 are paralogs, not orthologs, which affects the interpretation of the data with respect to the evolution of ER-mitochondria tethering. Our phylogenetic analyses show that PDZD8 co-occurs with ERMES components in lineages closely related to animals solidifying its identity as a paralog of Mmm1. Additionally, we identify two related paralogs, one specific to flagellated fungi, and one present only in unicellular relatives of animals. These results point to a complex evolutionary history of ER-mitochondria tethering involving multiple gene gains and losses in the lineage leading to animals and fungi.

Indexed as

PhylogenyAnimalsHumansMitochondrial ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsMitochondrial ProteinsSaccharomyces cerevisiae ProteinsERMESevolutionorthologparalogPdz8

Identifiers

PMID30109028
PMCPMC6069729
OpenAlexW2884933978

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.