Evidence map›Paper›PMID 30108211›Full record

ArticleNature communications2018

Revealing circadian mechanisms of integration and resilience by visualizing clock proteins working in real time.

Tetsuya Mori, Shogo Sugiyama, Mark Byrne, Carl Hirschie Johnson, Takayuki Uchihashi, Toshio Ando

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
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  5. Article
  6. Article
  7. Article
  8. The inner workings of an ancient biological clock.Trends in biochemical sciences · 2024
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Regulation mechanisms of the dual ATPase in KaiC.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tetsuya MoriDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, 37235, USA.ORCID http://orcid.org/0000-0001-6036-5261
Shogo SugiyamaDepartment of Physics, College of Science and Engineering, Kanazawa University, Kanazawa, 920-1192, Japan.
Mark ByrneDepartment of Chemistry, Physics, and Engineering, Spring Hill College, 4000 Dauphin St., Mobile, AL, 36608, USA.
Carl Hirschie JohnsonDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, 37235, USA. carl.h.johnson@vanderbilt.edu.
Takayuki UchihashiDepartment of Physics and Structural Biology Research Center, Nagoya University, Chikusa-ku, Nagoya, 464-8602, Japan. uchihast@d.phys.nagoya-u.ac.jp.
Toshio AndoNano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kanazawa, 920-1192, Japan. tando@staff.kanazawa-u.ac.jp.ORCID http://orcid.org/0000-0001-8819-154X

Funding

Research Project: Sensory and Multisensory Contributions to AutismU54HD083211 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DYKENS, ELISABETH MAY · 2015 to 2019
$7.1M
Circadian Programs in BacteriaR37GM067152 · NIGMS · VANDERBILT UNIVERSITY · PI JOHNSON, CARL HIRSCHIE · 2015 to 2024
$4.1M
Japan Science and Technology Agency (JST) JPMJCR13M1Japan Society for the Promotion of Science (JSPS) 17H06121Japan Society for the Promotion of Science (JSPS) JP15H03540Japan Society for the Promotion of Science (JSPS) JP16H00758Japan Society for the Promotion of Science (JSPS) JP16H00830Japan Society for the Promotion of Science (JSPS) JP24227005Japan Society for the Promotion of Science (JSPS) JP26119003NICHD NIH HHS U54 HD083211NIGMS NIH HHS R37 GM067152U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R37 GM067152
6 · The paper itself

Abstract

The circadian clock proteins KaiA, KaiB, and KaiC reconstitute a remarkable circa-24 h oscillation of KaiC phosphorylation that persists for many days in vitro. Here we use high-speed atomic force microscopy (HS-AFM) to visualize in real time and quantify the dynamic interactions of KaiA with KaiC on sub-second timescales. KaiA transiently interacts with KaiC, thereby stimulating KaiC autokinase activity. As KaiC becomes progressively more phosphorylated, KaiA's affinity for KaiC weakens, revealing a feedback of KaiC phosphostatus back onto the KaiA-binding events. These non-equilibrium interactions integrate high-frequency binding and unbinding events, thereby refining the period of the longer term oscillations. Moreover, this differential affinity phenomenon broadens the range of Kai protein stoichiometries that allow rhythmicity, explaining how the oscillation is resilient in an in vivo milieu that includes noise. Therefore, robustness of rhythmicity on a 24-h scale is explainable by molecular events occurring on a scale of sub-seconds.

Indexed as

Bacterial ProteinsCircadian RhythmCLOCK ProteinsComputer SimulationKineticsMicroscopy, Atomic ForceMutant ProteinsPhosphorylationProtein BindingProtein MultimerizationSynechococcusBacterial ProteinsCLOCK ProteinsMutant Proteins

Identifiers

PMID30108211
PMCPMC6092398

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.