Evidence map›Paper›PMID 30107853›Full record

ArticleGenome biology2018

CRISPR-SKIP: programmable gene splicing with single base editors.

Michael Gapinske, Alan Luu, Jackson Winter, Wendy S Woods, Kurt A Kostan, Nikhil Shiva, Jun S Song, Pablo Perez-Pinera

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 190 citations in OpenAlex.

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  15. Current trends in gene therapy to treat inherited disorders of the brain.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
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51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Michael GapinskeDepartment of Bioengineering, University of Illinois at Urbana-Champaign, 1406 West Green Street, Urbana, 61801-2918, IL, USA.
Alan LuuDepartment of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, Urbana, IL, 61801-3080, USA.
Jackson WinterDepartment of Bioengineering, University of Illinois at Urbana-Champaign, 1406 West Green Street, Urbana, 61801-2918, IL, USA.
Wendy S WoodsDepartment of Bioengineering, University of Illinois at Urbana-Champaign, 1406 West Green Street, Urbana, 61801-2918, IL, USA.
Kurt A KostanDepartment of Bioengineering, University of Illinois at Urbana-Champaign, 1406 West Green Street, Urbana, 61801-2918, IL, USA.
Nikhil ShivaDepartment of Bioengineering, University of Illinois at Urbana-Champaign, 1406 West Green Street, Urbana, 61801-2918, IL, USA.
Jun S SongDepartment of Physics, University of Illinois at Urbana-Champaign, 1110 West Green Street, Urbana, IL, 61801-3080, USA. songj@illinois.edu.
Pablo Perez-PineraDepartment of Bioengineering, University of Illinois at Urbana-Champaign, 1406 West Green Street, Urbana, 61801-2918, IL, USA. pablo@illinois.edu.
University of Illinois Urbana-Champaign · US

Funding

Predicting Transcriptional and Epigenetic Networks in Cancer from Sequencing DataR01CA163336 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Jun S Song · 2012 to 2026
$4.4M
American Heart Association 17SDG33650087National Science Foundation 0822613National Science Foundation NSF GRFP Fellowship DGE - 1746047NCI NIH HHS R01 CA163336NCI NIH HHS R01CA163336
6 · The paper itself

Abstract

CRISPR gene editing has revolutionized biomedicine and biotechnology by providing a simple means to engineer genes through targeted double-strand breaks in the genomic DNA of living cells. However, given the stochasticity of cellular DNA repair mechanisms and the potential for off-target mutations, technologies capable of introducing targeted changes with increased precision, such as single-base editors, are preferred. We present a versatile method termed CRISPR-SKIP that utilizes cytidine deaminase single-base editors to program exon skipping by mutating target DNA bases within splice acceptor sites. Given its simplicity and precision, CRISPR-SKIP will be broadly applicable in gene therapy and synthetic biology.

Indexed as

Gene EditingBase PairingBase SequenceCell LineClustered Regularly Interspaced Short Palindromic RepeatsConsensus SequenceExonsGenomeHigh-Throughput Nucleotide SequencingHumansRNA Splice SitesRNA Splice SitesAlternative splicingBase editingBRCA2CRISPR-Cas9Exon skippingGene editingGene isoformPIK3CARELASynthetic biology

Identifiers

PMID30107853
PMCPMC6092781
OpenAlexW2885949612

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.