Evidence map›Paper›PMID 30107528›Full record

ArticleNucleic acids research2018

Increased levels of RECQ5 shift DNA repair from canonical to alternative pathways.

Henry C Olson, Luther Davis, Kostantin Kiianitsa, Kevin J Khoo, Yilun Liu, Theo A Knijnenburg, Nancy Maizels

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. RECQL5 at theFrontiers in cell and developmental biology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Henry C OlsonDepartment of Biochemistry, University of Washington, 1959 NE Pacific St., Seattle, WA 98195, USA.
Luther DavisDepartment of Immunology, University of Washington, 1959 NE Pacific St., Seattle, WA 98195, USA.
Kostantin KiianitsaDepartment of Immunology, University of Washington, 1959 NE Pacific St., Seattle, WA 98195, USA.
Kevin J KhooDepartment of Biochemistry, University of Washington, 1959 NE Pacific St., Seattle, WA 98195, USA.
Yilun LiuDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope, 1500 E. Duarte Road, Duarte, CA 91010, USA.
Theo A KnijnenburgInstitute for Systems Biology, 401 Terry Ave. N., Seattle, WA 98109, USA.
Nancy MaizelsDepartment of Biochemistry, University of Washington, 1959 NE Pacific St., Seattle, WA 98195, USA.
University of Washington · USCity of Hope · USInstitute for Systems Biology · US

Funding

Tumor mutation signaturesP01CA077852 · NCI · UNIVERSITY OF WASHINGTON · PI SIDOROVA, JULIA · 1999 to 2019
$26.0M
TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
Genomic Instability at DNA NicksR01CA183967 · NCI · UNIVERSITY OF WASHINGTON · PI MAIZELS, NANCY · 2014 to 2018
$1.6M
Molecular Medicine Training ProgramT32GM095421 · NIGMS · UNIVERSITY OF WASHINGTON · PI HAWN, THOMAS R, LILES, W. CONRAD · 2011 to 2020
$1.6M
Understanding the role of RAD51C complexes in recombination and repairR01CA130910 · NCI · YALE UNIVERSITY · PI LIU, YILUN · 2008 to 2012
$1.4M
NCI NIH HHS P01 CA077852NCI NIH HHS R01 CA130910NCI NIH HHS R01 CA183967NIGMS NIH HHS T32 GM007270NIGMS NIH HHS T32 GM095421
6 · The paper itself

Abstract

RECQ5 (RECQL5) is one of several human helicases that dissociates RAD51-DNA filaments. The gene that encodes RECQ5 is frequently amplified in human tumors, but it is not known whether amplification correlates with increased gene expression, or how increased RECQ5 levels affect DNA repair at nicks and double-strand breaks. Here, we address these questions. We show that RECQ5 gene amplification correlates with increased gene expression in human tumors, by in silico analysis of over 9000 individual tumors representing 32 tumor types in the TCGA dataset. We demonstrate that, at double-strand breaks, increased RECQ5 levels inhibited canonical homology-directed repair (HDR) by double-stranded DNA donors, phenocopying the effect of BRCA deficiency. Conversely, at nicks, increased RECQ5 levels stimulated 'alternative' HDR by single-stranded DNA donors, which is normally suppressed by RAD51; this was accompanied by stimulation of mutagenic end-joining. Even modest changes (2-fold) in RECQ5 levels caused significant dysregulation of repair, especially HDR. These results suggest that in some tumors, RECQ5 gene amplification may have profound consequences for genomic instability.

Indexed as

Computer SimulationDNA Breaks, Double-StrandedDNA End-Joining RepairDNA RepairGene AmplificationGene Expression Regulation, NeoplasticGenomic InstabilityHumansMutagenesisNeoplasmsRad51 RecombinaseRecombinational DNA RepairRecQ HelicasesSignal TransductionRad51 RecombinaseRecQ HelicasesRECQL5 protein, human

Identifiers

PMID30107528
PMCPMC6182128
OpenAlexW2887316065

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.