Evidence map›Paper›PMID 30107520›Full record

ArticleInternational journal of epidemiology2019

Epigenome-wide association study in whole blood on type 2 diabetes among sub-Saharan African individuals: findings from the RODAM study.

Karlijn A C Meeks, Peter Henneman, Andrea Venema, Juliet Addo, Silver Bahendeka, Tom Burr, Ina Danquah, Cecilia Galbete, Marcel M A M Mannens, Frank P Mockenhaupt and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in International journal of epidemiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 7 pooled it
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 7 syntheses or guidelines pooled it, 117 citations in OpenAlex.

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  13. Metformin Alone and in Combinations Alter the Methylation Patterns ofEndocrine, metabolic & immune disorders drug targets · 2026
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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 6 countries.

Karlijn A C MeeksDepartment of Public Health, Amsterdam Public Health Research Institute, Academic Medical Center, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.
Peter HennemanDepartment of Clinical Genetics, Research Institute for Reproduction and Development, Academic Medical Center, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.
Andrea VenemaDepartment of Clinical Genetics, Research Institute for Reproduction and Development, Academic Medical Center, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.
Juliet AddoDepartment of Non-communicable Disease Epidemiology, London School of Hygiene and Tropical Medicine, London, UK.
Silver BahendekaMother Kevin Postgraduate Medical School (MKPGMS), Uganda Martyrs University, Kampala, Uganda.
Tom BurrGenomics Department, Source BioScience, Nottingham, UK.
Ina DanquahDepartment of Molecular Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Nuthetal, Germany.
Cecilia GalbeteDepartment of Molecular Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Nuthetal, Germany.
Marcel M A M MannensDepartment of Clinical Genetics, Research Institute for Reproduction and Development, Academic Medical Center, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.
Frank P MockenhauptInstitute of Tropical Medicine and International Health, Charité - University Medicine Berlin, Berlin, Germany.
Ellis Owusu-DaboSchool of Public Health, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
Charles N RotimiCenter for Research on Genomics and Global Health, National Human Genome Research Institute, Bethesda, MD, USA.
Matthias B SchulzeDepartment of Molecular Epidemiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Nuthetal, Germany.
Liam SmeethDepartment of Non-communicable Disease Epidemiology, London School of Hygiene and Tropical Medicine, London, UK.
Joachim SprangerDepartment of Endocrinology and Metabolism, Charité - University Medicine Berlin, Berlin, Germany.
Mohammad H ZafarmandDepartment of Public Health, Amsterdam Public Health Research Institute, Academic Medical Center, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.
Adebowale AdeyemoCenter for Research on Genomics and Global Health, National Human Genome Research Institute, Bethesda, MD, USA.
Charles AgyemangDepartment of Public Health, Amsterdam Public Health Research Institute, Academic Medical Center, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.
Amsterdam UMC Location University of Amsterdam · NLGerman Institute of Human Nutrition · DELondon School of Hygiene & Tropical Medicine · GBNational Human Genome Research Institute · USCharité - Universitätsmedizin Berlin · DEGerman Centre for Cardiovascular Research · DEKwame Nkrumah University of Science and Technology · GHSource BioScience (United Kingdom) · GBUganda Martyrs University · UG

Funding

Genetic epidemiology of complex diseasesZIAHG200362 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ROTIMI, CHARLES · 2009 to 2025
$54.7M
Intramural NIH HHS ZIA HG200362NHGRI NIH HHS ZIA HG200362
6 · The paper itself

Abstract

backgroundType 2 diabetes (T2D) results from a complex interplay between genetics and the environment. Several epigenome-wide association studies (EWAS) have found DNA methylation loci associated with T2D in European populations. However, data from African populations are lacking. We undertook the first EWAS for T2D among sub-Saharan Africans, aiming at identifying ubiquitous and novel DNA methylation loci associated with T2D.

methodsThe Illumina 450k DNA-methylation array was used on whole blood samples of 713 Ghanaian participants (256 with T2D, 457 controls) from the cross-sectional Research on Obesity and Diabetes among African Migrants (RODAM) study. Differentially methylated positions (DMPs) for T2D and HbA1c were identified through linear regression analysis adjusted for age, sex, estimated cell counts, hybridization batch, array position and body mass index (BMI). We also did a candidate analysis of previously reported EWAS loci for T2D in non-African populations, identified through a systematic literature search.

resultsFour DMPs [cg19693031 (TXNIP), cg04816311 (C7orf50), cg00574958 (CPT1A), cg07988171 (TPM4)] were associated with T2D after correction for inflation by possible systematic biases. The most strongly associated DMP-cg19693031, TXNIP (P = 2.6E-19) -showed hypomethylation in T2D cases compared with controls. Two out of the four DMPs [cg19693031 (TXNIP), cg04816311 (C7orf50)] remained associated with T2D after adjustment for BMI, and one locus [cg07988171 (TPM4)] that has not been reported previously.

conclusionsIn this first EWAS for T2D in sub-Saharan Africans, we have identified four DMPs at epigenome-wide level, one of which is novel. These findings provide insight into the epigenetic loci that underlie the burden of T2D in sub-Saharan Africans.

Indexed as

DNA MethylationBlack PeopleBody Mass IndexCarnitine O-PalmitoyltransferaseCarrier ProteinsCase-Control StudiesCross-Sectional StudiesDiabetes Mellitus, Type 2Epigenesis, GeneticEuropeFemaleGenome-Wide Association StudyGhanaHumansLinear ModelsMaleC7orf50 protein, humanCarnitine O-PalmitoyltransferaseCarrier ProteinsCPT1A protein, humanRNA-Binding ProteinsTPM4 protein, humanTropomyosinTXNIP protein, humanAfricansDNA-methylationepigenetic epidemiologyEWASRODAM studytype 2 diabetes

Identifiers

PMID30107520
PMCPMC6380309
OpenAlexW2885294207

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.