Evidence map›Paper›PMID 30107516›Full record

ArticleHuman molecular genetics2018

Fragile X mental retardation protein modulates the stability of its m6A-marked messenger RNA targets.

Feiran Zhang, Yunhee Kang, Mengli Wang, Yujing Li, Tianlei Xu, Wei Yang, Hongjun Song, Hao Wu, Qiang Shu, Peng Jin

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 169 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
169citing papers in PubMed, 1 pooled it
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

169 citing papers in PubMed, 1 synthesis or guideline pooled it, 223 citations in OpenAlex.

  1. Variable expression ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Pooled it
  2. Review
  3. Review
  4. Article
  5. Review
  6. FMRP promotes gastric cancer progression via mJournal of translational medicine · 2026
    Article
  7. mNature reviews. Neuroscience · 2026
    Review
  8. The mMolecular psychiatry · 2026
    Article
  9. Review
  10. The Role of NMedComm · 2026
    Review
  11. Review
  12. Review
  13. Review
  14. Emerging roles of RNA mInternational journal of oncology · 2026
    Review
  15. Integrated genetic analysis reveals synaptic mFrontiers in molecular neuroscience · 2026
    Article
  16. Review
  17. Review
  18. The role of mGenes & diseases · 2026
    Review
  19. RNA-Binding Proteins: Modulators of Canonical Wnt Signaling Pathway.International journal of molecular sciences · 2025
    Review
  20. mEpigenomes · 2025
    Review

109 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Feiran ZhangDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA.
Yunhee KangDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA.
Mengli WangDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA.
Yujing LiDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA.
Tianlei XuDepartment of Biostatistics and Bioinformatics, Emory University Rollins School of Public Health, Atlanta, GA, USA.
Wei YangDepartment of Neurology, The Second Hospital of Jilin University, Changchun, Jilin, China.
Hongjun SongDepartment of Neuroscience, Mahoney Institute for Neurosciences, Institute for Regenerative Medicine and The Epigenetics Institute, Perelman School for Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Hao WuDepartment of Biostatistics and Bioinformatics, Emory University Rollins School of Public Health, Atlanta, GA, USA.
Qiang ShuThe Children's Hospital and Institute of Translational Medicine, School of Medicine, Zhejiang University, Hangzhou, Zhejiang, China.
Peng JinDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA, USA.
Emory University · USCalifornia Institute for Regenerative Medicine · USChildren's Hospital of Zhejiang University · CNSecond Affiliated Hospital of Jilin University · CN

Funding

Transcriptome-wide base-resolution sequencing of pseudouridine in human normal and AD brain tissues-CEGS Admin supplement 2020-2021RM1HG008935 · NHGRI · UNIVERSITY OF CHICAGO · PI HE, CHUAN · 2016 to 2025
$24.4M
Molecular Basis of rCGG-Mediated NeurodegenerationR01NS051630 · NINDS · EMORY UNIVERSITY · PI NELSON, DAVID LOREN · 2006 to 2023
$9.8M
Recruitment CoreU54NS091859 · NINDS · EMORY UNIVERSITY · PI WARREN, STEPHEN T. · 2014 to 2019
$9.1M
Translational models of neurodevelopmental epigenetics and disease using human iPSCsP01NS097206 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI HE, CHUAN · 2016 to 2020
$4.3M
Development of new neurons in the adult brainR01NS047344 · NINDS · JOHNS HOPKINS UNIVERSITY · PI SONG, HONGJUN · 2003 to 2011
$3.4M
Local circuitry mechanisms regulating adult hippocampal neurogenesisR37NS047344 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI SONG, HONGJUN · 2013 to 2019
$2.9M
Tet-mediated Epigenetic Modulation in AutismR01MH102690 · NIMH · EMORY UNIVERSITY · PI JIN, PENG, WARREN, STEPHEN T. · 2014 to 2017
$2.6M
Statistical Methods for Single-Cell RNA-SeqR01GM122083 · NIGMS · EMORY UNIVERSITY · PI WU, HAO · 2016 to 2020
$1.7M
5-Hydroxymethylcytosine in NeurodevelopmentR01NS079625 · NINDS · EMORY UNIVERSITY · PI JIN, PENG · 2012 to 2016
$1.7M
Circuitry mechanisms regulating adult hippocampal neurogenesisR56NS047344 · NINDS · JOHNS HOPKINS UNIVERSITY · PI SONG, HONGJUN · 2012 to 2012
$405k
NHGRI NIH HHS RM1 HG008935NIGMS NIH HHS R01 GM122083NIMH NIH HHS R01 MH102690NINDS NIH HHS P01 NS097206NINDS NIH HHS R01 NS047344NINDS NIH HHS R01 NS051630NINDS NIH HHS R01 NS079625NINDS NIH HHS R37 NS047344NINDS NIH HHS R56 NS047344NINDS NIH HHS U54 NS091859
6 · The paper itself

Abstract

N6-methyladenosine (m6A) is the most prevalent internal modification of mammalian messenger RNAs (mRNAs) and long non-coding RNAs. The biological functions of this reversible RNA modification can be interpreted by cytoplasmic and nuclear 'm6A reader' proteins to fine-tune gene expression, such as mRNA degradation and translation initiation. Here we profiled transcriptome-wide m6A sites in adult mouse cerebral cortex, underscoring that m6A is a widespread epitranscriptomic modification in brain. Interestingly, the mRNA targets of fragile X mental retardation protein (FMRP), a selective RNA-binding protein, are enriched for m6A marks. Loss of functional FMRP leads to Fragile X syndrome (FXS), the most common inherited form of intellectual disability. Transcriptome-wide gene expression profiling identified 2035 genes differentially expressed in the absence of FMRP in cortex, and 92.5% of 174 downregulated FMRP targets are marked by m6A. Biochemical analyses indicate that FMRP binds to the m6A sites of its mRNA targets and interacts with m6A reader YTHDF2 in an RNA-independent manner. FMRP maintains the stability of its mRNA targets while YTHDF2 promotes the degradation of these mRNAs. These data together suggest that FMRP regulates the stability of its m6A-marked mRNA targets through YTHDF2, which could potentially contribute to the molecular pathogenesis of FXS.

Indexed as

AdenosineAnimalsCerebral CortexDisease Models, AnimalEpigenomicsFragile X Messenger Ribonucleoprotein 1Fragile X SyndromeGene Expression RegulationGenomeHumansMiceProteolysisRNA-Binding ProteinsRNA, MessengerTranscriptomeAdenosineFmr1 protein, mouseFragile X Messenger Ribonucleoprotein 1N-methyladenosineRNA-Binding ProteinsRNA, MessengerYTHDF2 protein, mouse

Identifiers

PMID30107516
PMCPMC6216232
OpenAlexW2885321095

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.