Evidence map›Paper›PMID 30107090›Full record

ArticlePlant biotechnology journal2019

Tracking disease resistance deployment in potato breeding by enrichment sequencing.

Miles R Armstrong, Jack Vossen, Tze Yin Lim, Ronald C B Hutten, Jianfei Xu, Shona M Strachan, Brian Harrower, Nicolas Champouret, Eleanor M Gilroy, Ingo Hein

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Toward sustainable control of phyto-nematodes: integrating lessons from crops to advance genetic modification in tomato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Review
  2. Article
  3. Article
  4. The Application of RenSeq for Pan-NLRome Analysis.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. SMRT-AgRenSeq-d in potato (Horticulture research · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Resisting Potato Cyst Nematodes With Resistance.Frontiers in plant science · 2021
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Miles R ArmstrongCMS, The James Hutton Institute, Dundee, UK.ORCID 0000-0002-9441-476X
Jack VossenWageningen University, Wageningen, The Netherlands.ORCID 0000-0002-2889-0653
Tze Yin LimCMS, The James Hutton Institute, Dundee, UK.
Ronald C B HuttenWageningen University, Wageningen, The Netherlands.
Jianfei XuChinese Academy of Agricultural Science (CAAS), Beijing, China.
Shona M StrachanCMS, The James Hutton Institute, Dundee, UK.ORCID 0000-0003-4460-6533
Brian HarrowerCMS, The James Hutton Institute, Dundee, UK.
Nicolas ChampouretSimplot Plant Sciences, Boise, Idaho, USA.
Eleanor M GilroyCMS, The James Hutton Institute, Dundee, UK.ORCID 0000-0002-5301-4268
Ingo HeinCMS, The James Hutton Institute, Dundee, UK.ORCID 0000-0002-0128-2084

Funding

Biotechnology and Biological Sciences Research Council BB/K018299/1Biotechnology and Biological Sciences Research Council BB/L008025/1Biotechnology and Biological Sciences Research Council BB/S015663/1Rural and Environment Science and Analytical Services Division
6 · The paper itself

Abstract

Following the molecular characterisation of functional disease resistance genes in recent years, methods to track and verify the integrity of multiple genes in varieties are needed for crop improvement through resistance stacking. Diagnostic resistance gene enrichment sequencing (dRenSeq) enables the high-confidence identification and complete sequence validation of known functional resistance genes in crops. As demonstrated for tetraploid potato varieties, the methodology is more robust and cost-effective in monitoring resistances than whole-genome sequencing and can be used to appraise (trans) gene integrity efficiently. All currently known NB-LRRs effective against viruses, nematodes and the late blight pathogen Phytophthora infestans can be tracked with dRenSeq in potato and hitherto unknown polymorphisms have been identified. The methodology provides a means to improve the speed and efficiency of future disease resistance breeding in crops by directing parental and progeny selection towards effective combinations of resistance genes.

Indexed as

Polymorphism, GeneticCrops, AgriculturalDisease ResistancePhytophthora infestansPlant BreedingPlant DiseasesPlant ProteinsPlants, Genetically ModifiedSolanum tuberosumTetraploidyPlant Proteinsbreedingcropsdisease resistance genesdRenSeqpotatotracking of NLRs

Identifiers

PMID30107090
PMCPMC6335062

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.