Evidence map›Paper›PMID 30105758›Full record

ArticleJournal of clinical laboratory analysis2019

Evaluation of the performance of two real-time PCR assays for detecting Mycobacterium species.

Jae-Hyung Lim, Chang-Ki Kim, Mi Hyun Bae

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Diagnostic Accuracy of AdvanSureDiagnostics (Basel, Switzerland) · 2025
    Article
  4. Article
  5. Pathological and immune features of non-tuberculous mycobacteria andFrontiers in cellular and infection microbiology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. GenoType CM DirectJournal of clinical medicine · 2022
    Article
  10. Comparing mRNA expression and protein abundance in MDRBiotechnology reports (Amsterdam, Netherlands) · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jae-Hyung LimDepartment of Laboratory Medicine, Hanyang University Guri Hospital, Hanynag University College of Medicine, Guri, Korea.
Chang-Ki KimDepartment of Laboratory Medicine, Seoul Clinical Laboratories, Yongin, Korea.
Mi Hyun BaeDepartment of Laboratory Medicine, Hanyang University Guri Hospital, Hanynag University College of Medicine, Guri, Korea.ORCID http://orcid.org/0000-0003-2818-342X
Hanyang University Guri Hospital · KRSeoul Medical Center · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundsRapid discrimination between Mycobacterium tuberculosis (MTB) and nontuberculous mycobacteria (NTM) is critical for patient treatment and to avoid unnecessary expenditure on infection control. Because real-time PCR assays distinguish MTB from NTM, we evaluated the performance of two real-time PCR assays (AdvanSure and PowerChek).

methodsThis study used 143 DNA samples from respiratory specimens which were collected based on routine PCR results using Anyplex kit. A total of 87 positive samples (65 MTB and 22 NTM) and 56 negative samples were collected consecutively during 6 months and 1 month, respectively. The diagnostic performance of PCR assays (AdvanSure and PowerChek) was retrospectively analyzed based on the results of conventional mycobacterial tests and routine PCR assay.

resultsBased on culture results, the sensitivities/specificities of AdvanSure and PowerChek were 90.7%/87.6% and 92.6%/85.4%, respectively, for MTB detection. For PCR-positive specimens, the quantification cycle (Cq) values of smear-negative specimens were higher than those of the smear-positive specimens (P < 0.001). As expected, the two PCR assays had the same sensitivities for NTM detection, viz. 90.0%, and their specificities were 99.2% and 98.4%, respectively. The overall agreement rate between the three PCR assays was 96.5% for MTB and 97.9% for NTM.

conclusionThe sensitivities of PCR assays in our study might be overestimated, because this study enrolled relatively lower number of PCR-negative samples which potentially missed PCR-negative but culture-positive specimens. However, the two real-time PCR assays for detecting MTB and NTM perform equally well in relative performance evaluation and their Cq values can be considered suitable for predicting smear-positive specimens.

Indexed as

DNA, BacterialHumansMycobacteriumMycobacterium InfectionsReal-Time Polymerase Chain ReactionReproducibility of ResultsSensitivity and SpecificityDNA, BacterialMycobacterium tuberculosisnontuberculous mycobacteriaNTMreal-time PCRtuberculosis

Identifiers

PMID30105758
PMCPMC6430364
OpenAlexW2887762454

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.