ArticleGenes & genomics2018
Genetic diversity and population structure among accessions of Perilla frutescens (L.) Britton in East Asia using new developed microsatellite markers.
Article in Genes & genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18 citing papers in PubMed.
- Genetic Diversity and Marker-Trait Associations in Commercial Cultivars and WeedyPlants (Basel, Switzerland) · 2026Article
- Development and application of SNP markers to discriminate Korean Perilla (Perilla frutescens) varieties using genomic sequence variations.Scientific reports · 2025Article
- Association Mapping Analysis of Morphological Characteristics in FPlants (Basel, Switzerland) · 2025Article
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- Article
- Genetic diversity and population structure of Polygonatum cyrtonema Hua in China using SSR markers.PloS one · 2023Article
- Utilization of NovelPlants (Basel, Switzerland) · 2022Article
- Genetic Diversity and Population Structure of Normal Maize Germplasm Collected in South Sudan Revealed by SSR Markers.Plants (Basel, Switzerland) · 2022Article
- Genetic Diversity Study on Geographical Populations of the Multipurpose SpeciesFrontiers in plant science · 2022Article
- Analysis of genetic diversity and relationships of Perilla frutescens using novel EST-SSR markers derived from transcriptome between wild-type and mutant Perilla.Molecular biology reports · 2021Article
- Genetic Variation of NativePlants (Basel, Switzerland) · 2021Article
- Identifying SSR Markers Related to Seed Fatty Acid Content inPlants (Basel, Switzerland) · 2021Article
- Bulk segregant analysis identifies SSR markers associated with leaf- and seed-related traits in Perilla crop (Perilla frutescens L.).Genes & genomics · 2021Article
- Identifying SSR markers associated with seed characteristics in Perilla (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Assessment of genetic diversity and population structure among a collection of Korean Perilla germplasms based on SSR markers.Genes & genomics · 2020Article
- Constructing a Core Collection of the Medicinal PlantFrontiers in plant science · 2020Article
- Genetic diversity and population structure of Perilla frutescens collected from Korea and China based on simple sequence repeats (SSRs).Genes & genomics · 2019Article
- Identification of quantitative trait loci associated with flowering time in perilla using genotyping-by-sequencing.Molecular biology reports · 2019Article
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4 authors.
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Abstract
SSRs were successfully isolated from the Perilla crop in our current study, and used to analyze Perilla accessions from East Asia. Analyses of the clear genetic diversity and relationship for Perilla crop still remain insufficient. In this study, 40 new simple sequence repeat (SSR) primer sets were developed from RNA sequences using transcriptome analysis. These new SSR markers were applied to analyze the diversity, relationships, and population structure among 35 accessions of the two cultivated types of Perilla crop and their weedy types. A total of 220 alleles were identified at all loci, with an average of 5.5 alleles per locus and a range between 2 and 10 alleles per locus. The MAF (major allele frequency) per locus varied from 0.229 to 0.943, with an average of 0.466. The average polymorphic information content (PIC) value was 0.603, ranging from 0.102 to 0.837. The genetic diversity (GD) ranged from 0.108 to 0.854, with an average of 0.654. Based on population structure analysis, all accessions were divided into three groups: Group I, Group II and the admixed group. This study demonstrated the utility of new SSR analysis for the study of genetic diversity and population structure among 35 Perilla accessions. The GD of each locus for accessions of cultivated var. frutescens, weedy var. frutescens, cultivated var. crispa, and weedy var. crispa were 0.415, 0.606, 0.308, and 0.480, respectively. Both weedy accessions exhibited higher GD and PIC values than their cultivated types in East Asia. The new SSR primers of Perilla species reported in this study may provide potential genetic markers for population genetics to enhance our understanding of the genetic diversity, genetic relationship and population structure of the cultivated and weedy types of P. frutescens in East Asia. In addition, new Perilla SSR primers developed from RNA-seq can be used in the future for cultivar identification, conservation of Perilla germplasm resources, genome mapping and tagging of important genes/QTLs for Perilla breeding programs.
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