Evidence map›Paper›PMID 30105402›Full record

ArticleEuropean biophysics journal : EBJ2019

Effect of triphenylphosphonium moiety on spatial structure and biointeractions of stereochemical variants of YRFK motif.

Ruslan Garifullin, Dmitriy S Blokhin, Rezeda A Akhmadishina, Natalia V Petrova, Alexandra M Kusova, Vladimir V Klochkov, Timur I Abdullin

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In one paragraph

Article in European biophysics journal : EBJ, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ruslan GarifullinInstitute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kazan, 420021, Russia.
Dmitriy S BlokhinInstitute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kazan, 420021, Russia. dblohin@kpfu.ru.
Rezeda A AkhmadishinaInstitute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kazan, 420021, Russia.
Natalia V PetrovaInstitute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kazan, 420021, Russia.
Alexandra M KusovaInstitute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kazan, 420021, Russia.
Vladimir V KlochkovInstitute of Physics, Kazan (Volga Region) Federal University, 18 Kremlyovskaya St., Kazan, 420008, Russia.
Timur I AbdullinInstitute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kazan, 420021, Russia. tabdulli@gmail.com.
Kazan Federal University · RUInstitute of Physics · RU

Funding

the Russian Foundation for Basic Research 16-33-60146
6 · The paper itself

Abstract

Chemical modification of therapeutic peptides is an important approach to improving their physicochemical and pharmacokinetic properties. The triphenylphosphonium (TPP) cation has proved to be a powerful modifier; however, its effects on peptide structure and activity remain uncharacterized. In this study, cytoprotective tetrapeptides based on the YRFK opioid motif with L- or D-Arg residues were linked to (triphenylphosphonio)carboxylic acids with ethylene and pentylene spacers (TPP-3 and TPP-6 groups, respectively). The three-dimensional structure of the oligopeptides was analyzed by NMR spectroscopy, computational methods and circular dichroism (CD). A more compact and bent structure with segregated aromatic groups was revealed for the D-arginine-containing tetrapeptide and its TPP-6 derivative. The TPP moiety caused structure-organizing effect on the tetrapeptides, resulting in transition from random coil to β-sheet structures, and decreased the peptide backbone flexibility up to ten times. The TPP-3-modified oligopeptide with the lowest RMSD value (ca. 0.05 Å) was characterized by intrapeptide hydrophobic interactions between the TPP and side groups of Tyr and Phe residues accompanied by strong CD induction. The TPP-6-modified oligopeptides showed enhanced ability to form intermolecular associates and disturb liposomal membranes. The relationship between the spatial structure of the oligopeptides and some of their biologically relevant interactions were additionally revealed and are discussed.

Indexed as

Amino Acid MotifsAmino Acid SequenceModels, MolecularOligopeptidesOrganophosphorus CompoundsStereoisomerismOligopeptidesOrganophosphorus CompoundsBiointeractionsCationic–aromatic oligopeptidesNMR spectroscopyThree-dimensional structureTriphenylphosphonium derivativesYRFK motif

Identifiers

PMID30105402
OpenAlexW2885249719

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.