Evidence map›Paper›PMID 30104693›Full record

ArticleScientific reports2018

Extensive genomic diversity among Mycobacterium marinum strains revealed by whole genome sequencing.

Sarbashis Das, B M Fredrik Pettersson, Phani Rama Krishna Behra, Amrita Mallick, Martin Cheramie, Malavika Ramesh, Lisa Shirreff, Tanner DuCote, Santanu Dasgupta, Don G Ennis and 1 more

Erratum issuedAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
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  6. Computational and Experimental Characterization ofBioinformatics and biology insights · 2026
    Article
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  8. Pathogens (Basel, Switzerland) · 2025
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Sarbashis DasDepartment of Cell and Molecular Biology, Box 596, Biomedical Centre, SE-751 24, Uppsala, Sweden.ORCID http://orcid.org/0000-0001-8799-691X
B M Fredrik PetterssonDepartment of Cell and Molecular Biology, Box 596, Biomedical Centre, SE-751 24, Uppsala, Sweden.ORCID http://orcid.org/0000-0003-4177-8145
Phani Rama Krishna BehraDepartment of Cell and Molecular Biology, Box 596, Biomedical Centre, SE-751 24, Uppsala, Sweden.ORCID http://orcid.org/0000-0002-8810-6066
Amrita MallickDepartment of Biology, University of Louisiana, Lafayette, Louisiana, USA.
Martin CheramieDepartment of Biology, University of Louisiana, Lafayette, Louisiana, USA.
Malavika RameshDepartment of Cell and Molecular Biology, Box 596, Biomedical Centre, SE-751 24, Uppsala, Sweden.
Lisa ShirreffDepartment of Biology, University of Louisiana, Lafayette, Louisiana, USA.
Tanner DuCoteDepartment of Biology, University of Louisiana, Lafayette, Louisiana, USA.
Santanu DasguptaDepartment of Cell and Molecular Biology, Box 596, Biomedical Centre, SE-751 24, Uppsala, Sweden.
Don G EnnisDepartment of Biology, University of Louisiana, Lafayette, Louisiana, USA.
Leif A KirsebomDepartment of Cell and Molecular Biology, Box 596, Biomedical Centre, SE-751 24, Uppsala, Sweden. Leif.kirsebom@icm.uu.se.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium marinum is the causative agent for the tuberculosis-like disease mycobacteriosis in fish and skin lesions in humans. Ubiquitous in its geographical distribution, M. marinum is known to occupy diverse fish as hosts. However, information about its genomic diversity is limited. Here, we provide the genome sequences for 15 M. marinum strains isolated from infected humans and fish. Comparative genomic analysis of these and four available genomes of the M. marinum strains M, E11, MB2 and Europe reveal high genomic diversity among the strains, leading to the conclusion that M. marinum should be divided into two different clusters, the "M"- and the "Aronson"-type. We suggest that these two clusters should be considered to represent two M. marinum subspecies. Our data also show that the M. marinum pan-genome for both groups is open and expanding and we provide data showing high number of mutational hotspots in M. marinum relative to other mycobacteria such as Mycobacterium tuberculosis. This high genomic diversity might be related to the ability of M. marinum to occupy different ecological niches.

Indexed as

AnimalsBase SequenceFishesGenetic VariationGenome, BacterialHumansMycobacterium Infections, NontuberculousMycobacterium marinumPhylogenyPlasmidsWhole Genome Sequencing

Identifiers

PMID30104693
PMCPMC6089878

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.