Evidence map›Paper›PMID 30104667›Full record

ArticleScientific reports2018

The landscape of the A-to-I RNA editome from 462 human genomes.

Zhangyi Ouyang, Chao Ren, Feng Liu, Gaole An, Xiaochen Bo, Wenjie Shu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Zhangyi OuyangDepartment of Biotechnology, Beijing Institute of Radiation Medicine, Beijing, China.
Chao RenDepartment of Biotechnology, Beijing Institute of Radiation Medicine, Beijing, China.
Feng LiuDepartment of information, The 188th hospital of ChaoZhou, ChaoZhou, China.
Gaole AnDepartment of Biotechnology, Beijing Institute of Radiation Medicine, Beijing, China.
Xiaochen BoDepartment of Biotechnology, Beijing Institute of Radiation Medicine, Beijing, China. boxc@bmi.ac.cn.
Wenjie ShuDepartment of Biotechnology, Beijing Institute of Radiation Medicine, Beijing, China. shuwj@bmi.ac.cn.ORCID 0000-0001-9044-2352
Beijing Radiation Center · CNBeijing VDJBio (China) · CNChaozhou Central Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A-to-I editing, as a post-transcriptional modification process mediated by ADAR, plays a crucial role in many biological processes in metazoans. However, how and to what extent A-to-I editing diversifies and shapes population diversity at the RNA level are largely unknown. Here, we used 462 mRNA-sequencing samples from five populations of the Geuvadis Project and identified 16,518 A-to-I editing sites, with false detection rate of 1.03%. These sites form the landscape of the RNA editome of the human genome. By exploring RNA editing within and between populations, we revealed the geographic restriction of rare editing sites and population-specific patterns of edQTL editing sites. Moreover, we showed that RNA editing can be used to characterize the subtle but substantial diversity between different populations, especially those from different continents. Taken together, our results demonstrated that the nature and structure of populations at the RNA level are illustrated well by RNA editing, which provides insights into the process of how A-to-I editing shapes population diversity at the transcriptomic level. Our work will facilitate the understanding of the landscape of the RNA editome at the population scale and will be helpful for interpreting differences in the distribution and prevalence of disease among individuals and across populations.

Indexed as

Genetics, PopulationAdenosineAdenosine DeaminaseComputational BiologyDatabases, GeneticDeaminationGenome, HumanHumansInosineQuantitative Trait LociRNA-Binding ProteinsRNA EditingRNA, MessengerTranscriptomeAdenosineAdenosine DeaminaseInosineRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID30104667
PMCPMC6089959
OpenAlexW2887408891

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.