Evidence map›Paper›PMID 30104217›Full record

ArticleBlood2018

North American ATLL has a distinct mutational and transcriptional profile and responds to epigenetic therapies.

Urvi A Shah, Elaine Y Chung, Orsi Giricz, Kith Pradhan, Keisuke Kataoka, Shanisha Gordon-Mitchell, Tushar D Bhagat, Yun Mai, Yongqiang Wei, Elise Ishida and 23 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
4.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 90 citations in OpenAlex.

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  12. Viral oncogenesis in cancer: from mechanisms to therapeutics.Signal transduction and targeted therapy · 2025
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  17. ETS1 Function in Leukemia and Lymphoma.Advances in experimental medicine and biology · 2024
    Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 6 institutions in 3 countries.

Urvi A ShahDepartment of Oncology, Montefiore Medical Center, Bronx, NY.ORCID 0000-0001-8419-1091
Elaine Y ChungDepartment of Cell Biology and.
Orsi GiriczDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY.
Kith PradhanDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY.
Keisuke KataokaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Shanisha Gordon-MitchellDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY.
Tushar D BhagatDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0002-4527-5505
Yun MaiDepartment of Cell Biology and.
Yongqiang WeiDepartment of Cell Biology and.
Elise IshidaDepartment of Cell Biology and.
Gaurav S ChoudharyDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY.
Ancy JosephDivision of Oncology, Washington University School of Medicine, St Louis, MO.ORCID 0000-0001-7371-1696
Ronald RiceDepartment of Pathology, Phelps Hospital, Northwell Health, Sleepy Hollow, NY.
Nadege GitegoDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY.
Crystall ParrishDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY.
Matthias BartensteinDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0002-0908-770X
Swati GoelDepartment of Oncology, Montefiore Medical Center, Bronx, NY.
Ioannis MantzarisDepartment of Oncology, Montefiore Medical Center, Bronx, NY.
Aditi ShastriDepartment of Oncology, Montefiore Medical Center, Bronx, NY.
Olga DermanDepartment of Oncology, Montefiore Medical Center, Bronx, NY.
Adam BinderDepartment of Oncology, Montefiore Medical Center, Bronx, NY.
Kira GritsmanDepartment of Oncology, Montefiore Medical Center, Bronx, NY.
Noah KornblumDepartment of Oncology, Montefiore Medical Center, Bronx, NY.
Ira BraunschweigDepartment of Oncology, Montefiore Medical Center, Bronx, NY.
Chirag BhagatGenoptix, Carlsbad, CA; and.
Jeff HallGenoptix, Carlsbad, CA; and.
Armin GraberGenoptix, Carlsbad, CA; and.
Lee RatnerDivision of Oncology, Washington University School of Medicine, St Louis, MO.
Yanhua WangDepartment of Pathology, Montefiore Medical Center, Bronx, NY.
Seishi OgawaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Amit VermaDepartment of Oncology, Montefiore Medical Center, Bronx, NY.
B Hilda YeDepartment of Cell Biology and.ORCID 0000-0002-2281-422X
Murali JanakiramDepartment of Oncology, Montefiore Medical Center, Bronx, NY.ORCID 0000-0001-9323-8007
Albert Einstein College of Medicine · USMontefiore Medical Center · USKyoto University · JPWashington University in St. Louis · USNanfang Hospital · CNNorthwell Health · US

Funding

Consortium for Advancing Management and Prevention of Cancer in People with HIVUM1CA121947 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Joseph A. Sparano · 2015 to 2026
$253.7M
WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
Role of Inflammation in Tax-mediated TumorigenesisP01CA100730 · NCI · WASHINGTON UNIVERSITY · PI Malachi Griffith · 2003 to 2026
$44.8M
PROLIFERATIVE EFFECTS OF HTLV1R01CA063417 · NCI · WASHINGTON UNIVERSITY · PI RATNER, LEE · 1995 to 2017
$3.7M
NCI NIH HHS P01 CA100730NCI NIH HHS P30 CA013330NCI NIH HHS R01 CA063417NCI NIH HHS UM1 CA121947
6 · The paper itself

Abstract

Adult T-cell leukemia lymphoma (ATLL) is a rare T cell neoplasm that is endemic in Japanese, Caribbean, and Latin American populations. Most North American ATLL patients are of Caribbean descent and are characterized by high rates of chemo-refractory disease and worse prognosis compared with Japanese ATLL. To determine genomic differences between these 2 cohorts, we performed targeted exon sequencing on 30 North American ATLL patients and compared the results with the Japanese ATLL cases. Although the frequency of TP53 mutations was comparable, the mutation frequency in epigenetic and histone modifying genes (57%) was significantly higher, whereas the mutation frequency in JAK/STAT and T-cell receptor/NF-κB pathway genes was significantly lower. The most common type of epigenetic mutation is that affecting EP300 (20%). As a category, epigenetic mutations were associated with adverse prognosis. Dissimilarities with the Japanese cases were also revealed by RNA sequencing analysis of 9 primary patient samples. ATLL samples with a mutated EP300 gene have decreased total and acetyl p53 protein and a transcriptional signature reminiscent of p53-mutated cancers. Most importantly, decitabine has highly selective single-agent activity in the EP300-mutated ATLL samples, suggesting that decitabine treatment induces a synthetic lethal phenotype in EP300-mutated ATLL cells. In conclusion, we demonstrate that North American ATLL has a distinct genomic landscape that is characterized by frequent epigenetic mutations that are targetable preclinically with DNA methyltransferase inhibitors.

Indexed as

AdultAgedAged, 80 and overAntimetabolites, AntineoplasticApoptosisDecitabineE1A-Associated p300 ProteinEpigenesis, GeneticFemaleHumansJapanLeukemia-Lymphoma, Adult T-CellMaleMiddle AgedMutation RatePrognosisAntimetabolites, AntineoplasticDecitabineE1A-Associated p300 ProteinEP300 protein, humanTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID30104217
PMCPMC6410908
OpenAlexW2885639023

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.