Evidence map›Paper›PMID 30103795›Full record

ArticleParasites & vectors2018

DNA barcoding of blackflies (Diptera: Simuliidae) as a tool for species identification and detection of hidden diversity in the eastern regions of Spain.

Ignacio Ruiz-Arrondo, Luis M Hernández-Triana, Aleksandra Ignjatović-Ćupina, Nadya Nikolova, Javier Alfonso Garza-Hernández, Mario Alberto Rodríguez-Pérez, José A Oteo, Anthony R Fooks, Javier Lucientes Curdi

Abstract read
In one paragraph

Article in Parasites & vectors, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
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  10. Surveillance of a Pest Through a Public Health Information System: The Case of the Blackfly (International journal of environmental research and public health · 2020
    Article
  11. ZooKeys · 2020
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ignacio Ruiz-ArrondoCenter for Rickettsiosis and Arthropod-Borne Diseases, Hospital Universitario San Pedro-CIBIR, Logroño, La Rioja, Spain. irarrondo@riojasalud.es.
Luis M Hernández-TrianaWildlife Zoonoses and Vector-borne Diseases Research Group, Virology Department, Animal and Plant Health Agency, Addlestone, UK. luis.hernandez-triana@apha.gsi.gov.uk.
Aleksandra Ignjatović-ĆupinaFaculty of Agriculture, University of Novi Sad, Novi Sad, Vojvodina Province, Serbia.
Nadya NikolovaUniversity of Liverpool, Liverpool, UK.
Javier Alfonso Garza-HernándezInstituto de Ciencias Biomédicas, Universidad Autónoma de Ciudad Juárez, Ciudad Juárez, Chihuahua, México.
Mario Alberto Rodríguez-PérezCentro de Biotecnología Genómica, Instituto Politécnico Nacional, Reynosa, Tamaulipas, México.
José A OteoCenter for Rickettsiosis and Arthropod-Borne Diseases, Hospital Universitario San Pedro-CIBIR, Logroño, La Rioja, Spain.
Anthony R FooksWildlife Zoonoses and Vector-borne Diseases Research Group, Virology Department, Animal and Plant Health Agency, Addlestone, UK.
Javier Lucientes CurdiDepartment of Animal Pathology, Faculty of Veterinary Sciences, Universidad de Zaragoza, Zaragoza, Spain.

Funding

Consejo Nacional de Ciencia y Tecnología 271108Department for Environment, Food and Rural Affairs SV3045, SE4113Ministry of Education, Science and Technology Development of the Republic of Serbia III43007, TR31084
6 · The paper itself

Abstract

backgroundBlackflies have negative impact on public and animal health due to the haematophagous habit of females. In recent times, in some regions in Spain, blackfly outbreaks are becoming more and more frequent, threatening the public health. However, there is still a paucity of data concerning the Spanish blackfly fauna. Correct identification of species is of paramount importance in order to provide correct information on species distribution, biology and behaviour, so that control measures could be implemented appropriately.

methodsBlackflies specimens (larvae, pupae, reared adults and biting females) were collected in the period 2015-2017 in and near rivers and streams from different regions in Spain. A modified Hotshot technique was used for the DNA extraction and the cox1 DNA barcoding region of the cytochrome c oxidase subunit 1 was sequenced from the specimens collected.

resultsIn total, we collected 239 specimens representing 22 species. Of these, six species are new records for the Aragón region: P. tomosvaryi, S. bertrandi, S. galloprovinciale, S. lineatum, S. rubzovianum and S. xanthinum. Cox1 DNA barcode sequences for 21 species were recovered, including four species of the genus Prosimulium and 17 species of the genus Simulium [Boophthora (1 species), Eusimulium (1 species), Nevermannia (4 species), Simulium (s.s.) (6 species), Trichodagmia (1 species) and Wilhelmia (4 species)]. For the first time the complete DNA barcodes for five species (P. tomosvaryi, S. carthusiense, S. brevidens, S. monticola and S. sergenti) were registered. Most of the specimens belonging to the same recognized species were clustered together in the neighbour-joining tree, except for S. argyreatum, S. monticola and S. variegatum. The overall genetic distance in the dataset was 0.14%. The average of the intraspecific genetic divergence within the different taxa was 1.47% (0.05-3.96%). In contrast, the interspecific divergence varied between 2.50-22.0%.

conclusionsIn this study we assessed the use of the cox1 DNA barcoding region for the identification of species of blackflies in Spain. Our results showed that combining DNA barcoding with morphology enhanced our taxonomic rationale in identifying the blackflies in the country.

Indexed as

DNA Barcoding, TaxonomicAnimal DistributionAnimalsBiodiversityElectron Transport Complex IVGenetic VariationInsect ProteinsPhylogenySimuliidaeSpainSpecies SpecificityElectron Transport Complex IVInsect ProteinsAragón regionBlackflyCryptic diversityDNA barcodingGenetic distanceNew recordsSimuliidaeSpain

Identifiers

PMID30103795
PMCPMC6090827

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.