Evidence map›Paper›PMID 30102405›Full record

ArticleNucleic acids research2018

p15PAF binding to PCNA modulates the DNA sliding surface.

Matteo De March, Susana Barrera-Vilarmau, Emmanuele Crespan, Elisa Mentegari, Nekane Merino, Amaia Gonzalez-Magaña, Miguel Romano-Moreno, Giovanni Maga, Ramon Crehuet, Silvia Onesti and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 37 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Matteo De MarchStructural Biology Laboratory, Elettra-Sincrotrone Trieste S.C.p.A., Trieste 34149, Italy.
Susana Barrera-VilarmauInstitute of Advanced Chemistry of Catalonia (IQAC), CSIC, Jordi Girona 18-26, 08034, Barcelona, Spain.
Emmanuele CrespanInstitute of Molecular Genetics, IGM-CNR, via Abbiategrasso 207, 27100 Pavia, Italy.
Elisa MentegariInstitute of Molecular Genetics, IGM-CNR, via Abbiategrasso 207, 27100 Pavia, Italy.
Nekane MerinoCIC bioGUNE, Parque Tecnológico de Bizkaia Edificio 800, 48160 Derio, Spain.
Amaia Gonzalez-MagañaCIC bioGUNE, Parque Tecnológico de Bizkaia Edificio 800, 48160 Derio, Spain.
Miguel Romano-MorenoCIC bioGUNE, Parque Tecnológico de Bizkaia Edificio 800, 48160 Derio, Spain.
Giovanni MagaInstitute of Molecular Genetics, IGM-CNR, via Abbiategrasso 207, 27100 Pavia, Italy.
Ramon CrehuetInstitute of Advanced Chemistry of Catalonia (IQAC), CSIC, Jordi Girona 18-26, 08034, Barcelona, Spain.
Silvia OnestiStructural Biology Laboratory, Elettra-Sincrotrone Trieste S.C.p.A., Trieste 34149, Italy.
Francisco J BlancoCIC bioGUNE, Parque Tecnológico de Bizkaia Edificio 800, 48160 Derio, Spain.
Alfredo De BiasioStructural Biology Laboratory, Elettra-Sincrotrone Trieste S.C.p.A., Trieste 34149, Italy.
CIC bioGUNE · ESIstituto di Genetica Molecolare · ITElettra-Sincrotrone Trieste S.C.p.A. · ITInstitute of Advanced Chemistry of Catalonia · ESIkerbasque · ESUniversity of Leicester · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

p15PAF is an oncogenic intrinsically disordered protein that regulates DNA replication and lesion bypass by interacting with the human sliding clamp PCNA. In the absence of DNA, p15PAF traverses the PCNA ring via an extended PIP-box that contacts the sliding surface. Here, we probed the atomic-scale structure of p15PAF-PCNA-DNA ternary complexes. Crystallography and MD simulations show that, when p15PAF occupies two subunits of the PCNA homotrimer, DNA within the ring channel binds the unoccupied subunit. The structure of PCNA-bound p15PAF in the absence and presence of DNA is invariant, and solution NMR confirms that DNA does not displace p15PAF from the ring wall. Thus, p15PAF reduces the available sliding surfaces of PCNA, and may function as a belt that fastens the DNA to the clamp during synthesis by the replicative polymerase (pol δ). This constraint, however, may need to be released for efficient DNA lesion bypass by the translesion synthesis polymerase (pol η). Accordingly, our biochemical data show that p15PAF impairs primer synthesis by pol η-PCNA holoenzyme against both damaged and normal DNA templates. In light of our findings, we discuss the possible mechanistic roles of p15PAF in DNA replication and suppression of DNA lesion bypass.

Indexed as

Carrier ProteinsCrystallography, X-RayDNADNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA Polymerase IIIDNA ReplicationEscherichia coliHoloenzymesHumansIntrinsically Disordered ProteinsMagnetic Resonance SpectroscopyMultiprotein ComplexesProliferating Cell Nuclear AntigenCarrier ProteinsDNADNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA Polymerase IIIDNA polymerase muHoloenzymesIntrinsically Disordered ProteinsMultiprotein ComplexesPCLAF protein, humanProliferating Cell Nuclear Antigen

Identifiers

PMID30102405
PMCPMC6182140
OpenAlexW2888502404

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.